Variant report

Variant	rs61415158
Chromosome Location	chr3:46137932-46137933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46133083..46135714-chr3:46137874..46140788,3	K562	blood:
2	chr3:46129217..46131683-chr3:46137784..46140762,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55830589	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55892227	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55956323	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56049139	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56405718	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56905314	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57383235	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57570169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58310007	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58381747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58403651	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58477700	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59173279	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59463328	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59539425	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60853701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889757	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72889761	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72889763	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72889772	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72889774	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72889785	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72889790	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72889791	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72889793	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72891503	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72891504	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72891505	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72891509	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72891511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830741	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73830746	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73830748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830756	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46127200-46138200	Weak transcription	Primary T cells from cord blood	blood
2	chr3:46129200-46147400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:46129400-46154200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr3:46129800-46140000	Enhancers	Fetal Thymus	thymus
5	chr3:46130200-46141200	Enhancers	Primary B cells from peripheral blood	blood
6	chr3:46130600-46143000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:46131400-46138000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:46131400-46152200	Weak transcription	Pancreas	Pancrea
9	chr3:46132000-46139000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:46132000-46139000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:46132000-46140200	Enhancers	Primary hematopoietic stem cells	blood
12	chr3:46132200-46138000	Weak transcription	NHDF-Ad	bronchial
13	chr3:46132400-46138800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:46132400-46139000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:46132600-46138000	Weak transcription	Adipose Nuclei	Adipose
16	chr3:46134800-46138400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr3:46134800-46138800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:46136600-46138200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:46136800-46143200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:46137000-46139400	Enhancers	GM12878-XiMat	blood
21	chr3:46137000-46139600	Enhancers	Primary B cells from cord blood	blood
22	chr3:46137000-46139600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:46137200-46139800	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr3:46137400-46138200	Enhancers	Colonic Mucosa	Colon
25	chr3:46137400-46138800	Enhancers	Dnd41	blood
26	chr3:46137400-46139400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr3:46137400-46142600	Enhancers	Primary T cells fromperipheralblood	blood
28	chr3:46137600-46138000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr3:46137600-46138000	Weak transcription	Placenta	Placenta
30	chr3:46137600-46139000	Bivalent Enhancer	Thymus	Thymus
31	chr3:46137600-46139200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:46137600-46139600	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr3:46137600-46140400	Enhancers	Spleen	Spleen
34	chr3:46137600-46141000	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr3:46137600-46141200	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr3:46137800-46138000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:46137800-46138000	Enhancers	Small Intestine	intestine
38	chr3:46137800-46138200	Enhancers	Primary neutrophils fromperipheralblood	blood

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