Variant report

Variant	rs61415260
Chromosome Location	chr4:16575887-16575888
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58963058	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16563800-16592000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:16571400-16584000	Weak transcription	Lung	lung
3	chr4:16571800-16599800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:16572400-16577600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:16573000-16584200	Weak transcription	Spleen	Spleen
6	chr4:16573600-16576400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:16573600-16577200	Enhancers	Fetal Lung	lung
8	chr4:16573600-16597200	Weak transcription	Left Ventricle	heart
9	chr4:16573800-16577200	Enhancers	Brain Germinal Matrix	brain
10	chr4:16574200-16576600	Enhancers	Fetal Brain Female	brain
11	chr4:16574200-16576800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:16574400-16576200	Enhancers	Brain Hippocampus Middle	brain
13	chr4:16574400-16576200	Enhancers	Fetal Muscle Leg	muscle
14	chr4:16574400-16576400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr4:16574400-16576400	Enhancers	Brain Anterior Caudate	brain
16	chr4:16574600-16576200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr4:16574600-16576400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr4:16574600-16576400	Enhancers	Adipose Nuclei	Adipose
19	chr4:16574600-16577000	Enhancers	Brain Cingulate Gyrus	brain
20	chr4:16574800-16576200	Enhancers	Brain Angular Gyrus	brain
21	chr4:16574800-16576200	Enhancers	Osteobl	bone
22	chr4:16575000-16576200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr4:16575000-16576200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:16575000-16576200	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr4:16575000-16576200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr4:16575000-16576200	Enhancers	Ovary	ovary
27	chr4:16575000-16576200	Enhancers	NH-A	brain
28	chr4:16575000-16576200	Enhancers	NHDF-Ad	bronchial
29	chr4:16575200-16576000	Flanking Active TSS	Fetal Brain Male	brain
30	chr4:16575200-16576000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr4:16575200-16576200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr4:16575200-16576200	Enhancers	NHLF	lung
33	chr4:16575400-16576200	Enhancers	Stomach Smooth Muscle	stomach
34	chr4:16575400-16581400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr4:16575400-16581600	Weak transcription	Fetal Stomach	stomach
36	chr4:16575400-16585400	Weak transcription	Right Ventricle	heart
37	chr4:16575800-16576200	Enhancers	Right Atrium	heart
38	chr4:16575800-16576400	Enhancers	Fetal Kidney	kidney

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