Variant report

Variant	rs61418575
Chromosome Location	chr7:27403926-27403927
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27402338..27404495-chr7:27407726..27411327,5	K562	blood:
2	chr7:27403084..27405273-chr7:27422070..27424632,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17502929	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28398473	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28398498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28398506	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27398200-27407400	Weak transcription	Pancreas	Pancrea
2	chr7:27401200-27404400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:27402400-27404000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:27403200-27405000	Enhancers	Stomach Mucosa	stomach
5	chr7:27403400-27404000	Enhancers	Brain Angular Gyrus	brain
6	chr7:27403400-27404000	Enhancers	K562	blood
7	chr7:27403400-27404000	Enhancers	NHLF	lung
8	chr7:27403400-27404200	Enhancers	Brain Cingulate Gyrus	brain
9	chr7:27403400-27404200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr7:27403400-27404600	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr7:27403400-27404800	Enhancers	Placenta	Placenta
12	chr7:27403400-27405000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:27403400-27405000	Enhancers	Spleen	Spleen
14	chr7:27403600-27404000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:27403600-27404200	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr7:27403600-27404800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:27403600-27404800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr7:27403600-27404800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr7:27403600-27404800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:27403600-27404800	Enhancers	Psoas Muscle	Psoas
21	chr7:27403800-27404000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:27403800-27404000	Enhancers	Brain Hippocampus Middle	brain
23	chr7:27403800-27404000	Active TSS	Stomach Smooth Muscle	stomach
24	chr7:27403800-27404200	Enhancers	Brain Anterior Caudate	brain
25	chr7:27403800-27404200	Active TSS	Colon Smooth Muscle	Colon
26	chr7:27403800-27404200	Enhancers	Duodenum Mucosa	Duodenum
27	chr7:27403800-27404200	Active TSS	Ovary	ovary
28	chr7:27403800-27404200	Flanking Active TSS	NHDF-Ad	bronchial
29	chr7:27403800-27404400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr7:27403800-27404400	Flanking Active TSS	Liver	Liver
31	chr7:27403800-27404400	Flanking Active TSS	Hela-S3	cervix
32	chr7:27403800-27404600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr7:27403800-27404600	Enhancers	Fetal Lung	lung
34	chr7:27403800-27404600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr7:27403800-27404800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:27403800-27404800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:27403800-27404800	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr7:27403800-27404800	Flanking Active TSS	Osteobl	bone
39	chr7:27403800-27405000	Enhancers	Brain Substantia Nigra	brain

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