Variant report

Variant	rs61422344
Chromosome Location	chr16:81897896-81897897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81884180..81885826-chr16:81895799..81898361,2	K562	blood:
2	chr16:81885841..81888862-chr16:81895847..81897898,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4538005	1.00[AMR][1000 genomes]
rs57747833	1.00[AMR][1000 genomes]
rs59207660	1.00[AMR][1000 genomes]
rs73590844	1.00[AMR][1000 genomes]
rs73592931	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9940401	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81866800-81898600	Weak transcription	Right Atrium	heart
2	chr16:81876200-81918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:81880000-81911200	Weak transcription	Pancreas	Pancrea
4	chr16:81880400-81908200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr16:81887600-81901800	Weak transcription	Fetal Kidney	kidney
6	chr16:81887800-81899000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr16:81892000-81900600	Weak transcription	Thymus	Thymus
8	chr16:81894400-81900400	Weak transcription	Liver	Liver
9	chr16:81894800-81912400	Weak transcription	Fetal Intestine Small	intestine
10	chr16:81895800-81902600	Genic enhancers	Primary B cells from peripheral blood	blood
11	chr16:81896000-81898200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr16:81896000-81900800	Weak transcription	Esophagus	oesophagus
13	chr16:81896200-81898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr16:81896200-81898000	Weak transcription	HMEC	breast
15	chr16:81896200-81900000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr16:81896400-81898400	Genic enhancers	Primary B cells from cord blood	blood
17	chr16:81896400-81898600	Weak transcription	Lung	lung
18	chr16:81896400-81900000	Weak transcription	HUVEC	blood vessel
19	chr16:81896400-81902400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr16:81896800-81910400	Weak transcription	Gastric	stomach
21	chr16:81897000-81899200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr16:81897200-81898000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr16:81897200-81898800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr16:81897200-81898800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr16:81897200-81899000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:81897200-81899000	Enhancers	H9 Cell Line	embryonic stem cell
27	chr16:81897200-81899000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr16:81897200-81899000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr16:81897200-81899000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr16:81897200-81899200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr16:81897200-81899200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr16:81897200-81899400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr16:81897400-81899000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr16:81897400-81901800	Weak transcription	Primary hematopoietic stem cells	blood
35	chr16:81897600-81898600	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr16:81897600-81898600	Weak transcription	Spleen	Spleen
37	chr16:81897600-81898800	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr16:81897600-81898800	Enhancers	Duodenum Mucosa	Duodenum
39	chr16:81897600-81902000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr16:81897600-81902200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr16:81897600-81902600	Genic enhancers	GM12878-XiMat	blood
42	chr16:81897800-81898000	Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr16:81897800-81899000	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr16:81897800-81899200	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr16:81897800-81899400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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