Variant report

Variant	rs61432611
Chromosome Location	chr15:39886430-39886431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39885481..39888433-chr15:39892783..39894545,2	K562	blood:
2	chr15:39886322..39888433-chr15:39891587..39894545,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FSIP1-1	chr15:39886256-39886432	ENSG00000259279.1

Variant related genes	Relation type
ENSG00000150667	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2898963	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57040293	1.00[AMR][1000 genomes]
rs57130082	1.00[AMR][1000 genomes]
rs58634016	1.00[AMR][1000 genomes]
rs59917450	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7169850	1.00[AMR][1000 genomes]
rs7178937	1.00[AMR][1000 genomes]
rs73391234	1.00[AMR][1000 genomes]
rs73391256	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73391288	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv832977	chr15:39817512-39981520	Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1048628	chr15:39877498-39940104	Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1502	chr15:39884314-39928968	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39873400-39886800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr15:39874800-39889200	Weak transcription	Brain Substantia Nigra	brain
3	chr15:39875000-39889400	Weak transcription	Brain Anterior Caudate	brain
4	chr15:39875200-39887800	Strong transcription	H9 Cell Line	embryonic stem cell
5	chr15:39875200-39888400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:39875200-39889800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:39875600-39889000	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr15:39875600-39890200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:39875600-39890400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:39875800-39889600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:39876000-39886600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:39876000-39886800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:39876000-39888600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:39876200-39888200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr15:39876200-39890200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr15:39876200-39890400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr15:39877000-39887600	Weak transcription	Brain Germinal Matrix	brain
18	chr15:39877200-39890400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:39877800-39887200	Weak transcription	Fetal Thymus	thymus
20	chr15:39877800-39888200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:39877800-39888600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:39878000-39888400	Strong transcription	Left Ventricle	heart
23	chr15:39878000-39890200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:39878200-39886800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr15:39878200-39888400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr15:39878400-39888400	Strong transcription	NHEK	skin
27	chr15:39878600-39888400	Strong transcription	HepG2	liver
28	chr15:39878600-39888800	Strong transcription	Placenta Amnion	Placenta Amnion
29	chr15:39879000-39888800	Strong transcription	Fetal Muscle Leg	muscle
30	chr15:39879200-39888400	Strong transcription	Adipose Nuclei	Adipose
31	chr15:39879200-39888400	Strong transcription	Fetal Lung	lung
32	chr15:39879800-39889400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:39880000-39888000	Strong transcription	Fetal Heart	heart
34	chr15:39880200-39889400	ZNF genes & repeats	Fetal Intestine Large	intestine
35	chr15:39880600-39887800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:39880600-39887800	Strong transcription	Ovary	ovary
37	chr15:39880800-39886600	Strong transcription	Fetal Stomach	stomach
38	chr15:39880800-39888600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr15:39880800-39890200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:39881000-39888800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:39881400-39888400	Strong transcription	Right Ventricle	heart
42	chr15:39881400-39888800	Strong transcription	Liver	Liver
43	chr15:39881400-39889200	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr15:39882000-39889800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:39882200-39887600	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr15:39882200-39888200	Strong transcription	Esophagus	oesophagus
47	chr15:39882200-39888400	Strong transcription	Fetal Muscle Trunk	muscle
48	chr15:39882200-39889800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr15:39883000-39889000	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:39883200-39886600	Genic enhancers	NHLF	lung

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