Variant report

Variant	rs61447009
Chromosome Location	chr6:33361451-33361452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr6:33358639-33361468	SK-N-SH	brain:	n/a	n/a
2	ZNF384	chr6:33361034-33361654	GM12878	blood:	n/a	n/a

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32936666..32939842-chr6:33360330..33364086,3	MCF-7	breast:
2	chr6:33279554..33283546-chr6:33360483..33362156,3	MCF-7	breast:
3	chr6:33283316..33288344-chr6:33357863..33362367,8	K562	blood:
4	chr6:33357335..33362175-chr6:33383352..33389421,14	K562	blood:
5	chr6:33239039..33242495-chr6:33357243..33362134,5	MCF-7	breast:
6	chr6:33359751..33362577-chr6:33420507..33423497,2	K562	blood:
7	chr6:33358575..33362850-chr6:33383674..33386989,4	MCF-7	breast:
8	chr6:33285348..33292496-chr6:33357328..33361566,13	K562	blood:
9	chr6:33238428..33241280-chr6:33357854..33362793,6	MCF-7	breast:
10	chr6:33360629..33362485-chr6:33371591..33374109,2	MCF-7	breast:
11	chr6:33237283..33247485-chr6:33356185..33362256,17	K562	blood:
12	chr6:33256540..33259907-chr6:33358017..33361464,3	MCF-7	breast:
13	chr6:33278075..33283012-chr6:33360979..33364412,4	MCF-7	breast:
14	chr6:33283943..33291558-chr6:33357867..33362243,10	MCF-7	breast:
15	chr6:33243392..33248315-chr6:33357393..33361975,11	K562	blood:
16	chr6:33280708..33283139-chr6:33358214..33362149,5	K562	blood:
17	chr6:33356271..33363521-chr6:33371085..33380351,32	K562	blood:
18	chr6:33283728..33287391-chr6:33357794..33361686,6	MCF-7	breast:
19	chr6:33265384..33269852-chr6:33356528..33361842,9	K562	blood:

No data

Variant related genes	Relation type
RPL35AP4	TF binding region
ENSG00000231500	Chromatin interaction
ENSG00000204209	Chromatin interaction
ENSG00000235863	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000204220	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000112511	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000197283	Chromatin interaction
ENSG00000236104	Chromatin interaction
ENSG00000213588	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000112514	Chromatin interaction
ENSG00000227057	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs61737694	1.00[AMR][1000 genomes]
rs6902761	1.00[AMR][1000 genomes]
rs6909412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923740	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6929135	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7752625	1.00[ASN][1000 genomes]
rs7754065	1.00[AMR][1000 genomes]
rs7754284	1.00[AMR][1000 genomes]
rs7758114	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
2	nsv830637	chr6:33329365-33510704	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33358800-33361800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:33359000-33362000	Active TSS	HSMM	muscle
3	chr6:33359000-33362600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:33359800-33363400	Transcr. at gene 5' and 3'	Dnd41	blood
5	chr6:33360000-33371000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:33360000-33377400	Weak transcription	Small Intestine	intestine
7	chr6:33360000-33377600	Weak transcription	Right Atrium	heart
8	chr6:33360200-33362400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:33360400-33361600	Enhancers	Primary B cells from cord blood	blood
10	chr6:33360400-33362200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:33360400-33377600	Weak transcription	Esophagus	oesophagus
12	chr6:33360400-33377600	Weak transcription	Lung	lung
13	chr6:33360800-33361600	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:33360800-33362400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:33360800-33362600	Active TSS	Brain Germinal Matrix	brain
16	chr6:33360800-33365800	Weak transcription	Stomach Mucosa	stomach
17	chr6:33360800-33371000	Weak transcription	Placenta	Placenta
18	chr6:33360800-33371200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:33360800-33377200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr6:33361000-33361800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:33361000-33362000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:33361000-33363000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:33361000-33364000	Enhancers	Fetal Heart	heart
24	chr6:33361000-33365400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr6:33361000-33371000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:33361000-33371200	Weak transcription	Gastric	stomach
27	chr6:33361000-33371400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr6:33361000-33372600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:33361000-33377200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:33361200-33361800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:33361200-33361800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:33361200-33361800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:33361200-33361800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:33361200-33361800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:33361200-33361800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr6:33361200-33361800	Active TSS	Muscle Satellite Cultured Cells	--
37	chr6:33361200-33361800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr6:33361200-33361800	Weak transcription	Fetal Brain Female	brain
39	chr6:33361200-33361800	Weak transcription	Thymus	Thymus
40	chr6:33361200-33361800	Active TSS	Hela-S3	cervix
41	chr6:33361200-33361800	Active TSS	NHDF-Ad	bronchial
42	chr6:33361200-33361800	Enhancers	NHEK	skin
43	chr6:33361200-33361800	Enhancers	NHLF	lung
44	chr6:33361200-33362000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:33361200-33362000	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:33361200-33362000	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:33361200-33362000	Enhancers	Fetal Muscle Leg	muscle
48	chr6:33361200-33362200	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:33361200-33362200	Enhancers	Fetal Stomach	stomach
50	chr6:33361200-33362400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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