Variant report

Variant	rs61453067
Chromosome Location	chr6:71360562-71360563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11970089	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12662513	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv886147	chr6:71273253-71471863	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71359200-71360800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:71359200-71361800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:71359600-71360800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:71359600-71362000	Enhancers	Primary T cells from cord blood	blood
5	chr6:71359600-71362200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:71359600-71362600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:71359800-71360600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:71359800-71360800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:71359800-71360800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr6:71359800-71360800	Enhancers	Dnd41	blood
11	chr6:71359800-71362200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:71359800-71362200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:71359800-71362200	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr6:71360400-71361400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:71360400-71361400	Enhancers	Fetal Thymus	thymus
16	chr6:71360400-71362000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr6:71360400-71362000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr6:71360400-71362600	Enhancers	Primary T cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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