Variant report

Variant	rs61458598
Chromosome Location	chr1:197323727-197323728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10157465	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10922200	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10922201	1.00[EUR][1000 genomes]
rs12061783	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12068255	1.00[EUR][1000 genomes]
rs13375540	0.80[AFR][1000 genomes]
rs1572514	0.95[EUR][1000 genomes]
rs2786104	0.91[EUR][1000 genomes]
rs2821126	0.94[EUR][1000 genomes]
rs61034691	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1014039	chr1:197311285-197529212	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197313800-197324000	Weak transcription	HSMMtube	muscle
2	chr1:197316200-197329200	Weak transcription	Brain Substantia Nigra	brain
3	chr1:197323400-197324000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:197323600-197324000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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