Variant report

Variant	rs61487116
Chromosome Location	chr21:38213629-38213630
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:38212395..38215804-chr21:38217243..38219693,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59115852	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531762	chr21:38084803-38781131	Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	77 gene(s)	inside rSNPs	diseases
2	nsv1055763	chr21:38120861-38308144	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv544437	chr21:38120861-38308144	Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2763684	chr21:38163515-38421387	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
5	esv2751929	chr21:38170430-38432621	Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:38160800-38230800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr21:38168800-38217200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr21:38172200-38221800	Weak transcription	Aorta	Aorta
4	chr21:38192600-38219000	Weak transcription	Hela-S3	cervix
5	chr21:38193600-38218600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr21:38194400-38231000	Weak transcription	Pancreas	Pancrea
7	chr21:38198000-38221800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr21:38198200-38232200	Weak transcription	Fetal Intestine Small	intestine
9	chr21:38207400-38226600	Weak transcription	Left Ventricle	heart
10	chr21:38208400-38214000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr21:38208600-38218600	Weak transcription	HSMMtube	muscle
12	chr21:38210600-38221800	Weak transcription	Ovary	ovary
13	chr21:38211800-38218400	Weak transcription	A549	lung
14	chr21:38211800-38219000	Weak transcription	HSMM	muscle
15	chr21:38212000-38219200	Weak transcription	NHLF	lung
16	chr21:38212000-38221800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr21:38212200-38214000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr21:38212200-38214000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr21:38212400-38213800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr21:38212400-38219000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr21:38213200-38216000	Weak transcription	Primary hematopoietic stem cells	blood

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