Variant report

Variant	rs61489880
Chromosome Location	chr14:73018713-73018714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:73016000..73018976-chr14:73019130..73021543,2	K562	blood:
2	chr14:73016052..73018355-chr14:73018682..73020978,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17117326	0.83[ASN][1000 genomes]
rs61299139	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7146557	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:73012000-73025200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:73012200-73019000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr14:73012200-73019000	Weak transcription	Right Atrium	heart
4	chr14:73012200-73019600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:73012200-73019800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:73012200-73025600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:73012400-73019600	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:73012400-73032000	Weak transcription	Brain Germinal Matrix	brain
9	chr14:73013800-73025000	Weak transcription	Fetal Brain Female	brain
10	chr14:73014000-73019600	Weak transcription	Left Ventricle	heart
11	chr14:73014000-73020000	Weak transcription	Brain Angular Gyrus	brain
12	chr14:73014600-73019400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:73014800-73026200	Weak transcription	Right Ventricle	heart
14	chr14:73015000-73019800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:73016000-73019600	Weak transcription	Fetal Brain Male	brain
16	chr14:73016000-73021600	Weak transcription	Spleen	Spleen
17	chr14:73016200-73019800	Weak transcription	NH-A	brain
18	chr14:73016400-73020800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:73016600-73021400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:73016800-73019800	Weak transcription	HSMM	muscle
21	chr14:73016800-73020800	Weak transcription	Psoas Muscle	Psoas
22	chr14:73017000-73019600	Weak transcription	HSMMtube	muscle
23	chr14:73017200-73019600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:73017200-73025000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr14:73018600-73018800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr14:73018600-73019000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:73018600-73019000	Enhancers	Fetal Stomach	stomach
28	chr14:73018600-73019200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr14:73018600-73021200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links