Variant report

Variant	rs61492840
Chromosome Location	chr1:185773954-185773955
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185773170..185775878-chr1:185781789..185784081,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10127552	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239000	0.91[AFR][1000 genomes]
rs28507443	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28571005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41317459	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57642813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57646071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57647869	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6675790	0.91[AFR][1000 genomes]
rs6686746	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6689317	0.91[AFR][1000 genomes]
rs6701269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701921	0.91[AFR][1000 genomes]
rs6703750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73054405	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73054410	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73054419	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73054444	0.80[AFR][1000 genomes]
rs73054452	0.91[AFR][1000 genomes]
rs73054473	0.91[AFR][1000 genomes]
rs73058244	0.91[AFR][1000 genomes]
rs73058248	0.91[AFR][1000 genomes]
rs73058365	0.89[AFR][1000 genomes]
rs73058371	0.82[AFR][1000 genomes]
rs73058381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73058387	1.00[AMR][1000 genomes]
rs73058389	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73058395	1.00[AMR][1000 genomes]
rs73060472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73060496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070588	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072072	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072073	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7514923	1.00[AMR][1000 genomes]
rs9727715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185764800-185774800	Weak transcription	Aorta	Aorta
2	chr1:185772800-185774200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:185773400-185774000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr1:185773400-185774000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:185773400-185774000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:185773400-185774000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:185773400-185778000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:185773600-185774000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:185773600-185774200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:185773600-185774600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:185773800-185774000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr1:185773800-185774000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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