Variant report

Variant	rs61499920
Chromosome Location	chr22:33378899-33378900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33365795..33367834-chr22:33378280..33381010,2	K562	blood:
2	chr22:33376392..33378226-chr22:33378707..33381448,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16991613	1.00[EUR][1000 genomes]
rs58068804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58893951	1.00[EUR][1000 genomes]
rs58952697	1.00[EUR][1000 genomes]
rs59860687	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5994644	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998666	1.00[EUR][1000 genomes]
rs5998667	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998673	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5998675	1.00[EUR][1000 genomes]
rs7284962	1.00[EUR][1000 genomes]
rs7287335	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408532	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408546	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408556	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs734315	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73881911	1.00[EUR][1000 genomes]
rs73881913	1.00[EUR][1000 genomes]
rs73881916	1.00[EUR][1000 genomes]
rs8135048	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8135137	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8139676	1.00[EUR][1000 genomes]
rs8139856	1.00[EUR][1000 genomes]
rs8140808	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8140988	1.00[EUR][1000 genomes]
rs8141527	1.00[EUR][1000 genomes]
rs8142539	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531568	chr22:33336868-33480272	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv531587	chr22:33346710-33809338	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33314000-33380800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33348000-33382400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:33354400-33381800	Weak transcription	Fetal Brain Male	brain
4	chr22:33354600-33387400	Weak transcription	Fetal Brain Female	brain
5	chr22:33361000-33380400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr22:33368800-33381800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr22:33374000-33381800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr22:33374400-33380400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr22:33374600-33381800	Weak transcription	Brain Angular Gyrus	brain
10	chr22:33374800-33381200	Weak transcription	Lung	lung
11	chr22:33376000-33380400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr22:33376200-33381800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr22:33376200-33381800	Weak transcription	HepG2	liver
14	chr22:33376200-33382400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr22:33376400-33380400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr22:33376400-33381800	Weak transcription	Liver	Liver
17	chr22:33376600-33382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr22:33376800-33380200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr22:33376800-33381800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr22:33378600-33382000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr22:33378800-33381400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links