Variant report

Variant	rs61506183
Chromosome Location	chr22:31641349-31641350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31638486..31641770-chr22:31648359..31651632,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58921166	1.00[AMR][1000 genomes]
rs59592122	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61098917	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7289883	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73392205	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8138024	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1067003	chr22:31558663-31697093	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1058844	chr22:31597104-31725296	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31626600-31643800	Weak transcription	Left Ventricle	heart
2	chr22:31626600-31643800	Weak transcription	Spleen	Spleen
3	chr22:31627800-31643200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr22:31627800-31643400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr22:31627800-31643400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr22:31628000-31643800	Weak transcription	Brain Hippocampus Middle	brain
7	chr22:31631600-31643800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr22:31632000-31643200	Weak transcription	Colonic Mucosa	Colon
9	chr22:31634400-31643800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr22:31634800-31643600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr22:31636200-31643800	Weak transcription	Fetal Lung	lung
12	chr22:31636200-31644200	Weak transcription	Ovary	ovary
13	chr22:31636400-31642200	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr22:31637400-31641400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr22:31637800-31643800	Weak transcription	Adipose Nuclei	Adipose
16	chr22:31637800-31643800	Weak transcription	Pancreas	Pancrea
17	chr22:31638200-31643400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr22:31638200-31643600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr22:31638200-31643600	Weak transcription	Dnd41	blood
20	chr22:31638400-31643800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr22:31639000-31641800	Enhancers	Fetal Muscle Leg	muscle
22	chr22:31639400-31641400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr22:31639400-31644000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr22:31639600-31644200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr22:31639800-31643200	Strong transcription	Thymus	Thymus
26	chr22:31639800-31643600	Weak transcription	Primary T cells from cord blood	blood
27	chr22:31639800-31643800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr22:31640000-31641400	Enhancers	Fetal Thymus	thymus
29	chr22:31640000-31642800	Weak transcription	Primary B cells from cord blood	blood
30	chr22:31640000-31643600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr22:31640000-31643800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr22:31640200-31641400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr22:31640200-31642200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr22:31640200-31643800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr22:31640200-31643800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr22:31640200-31643800	Weak transcription	Right Atrium	heart
37	chr22:31640400-31641800	Strong transcription	HepG2	liver
38	chr22:31640400-31643600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr22:31640600-31641400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr22:31640600-31641400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr22:31640600-31641400	Enhancers	NH-A	brain
42	chr22:31640600-31643000	Weak transcription	Lung	lung
43	chr22:31640600-31643200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr22:31640600-31643600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr22:31640600-31643800	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr22:31640600-31643800	Weak transcription	Esophagus	oesophagus
47	chr22:31640600-31643800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr22:31640600-31644400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr22:31640800-31641400	Enhancers	Hela-S3	cervix
50	chr22:31640800-31642800	Strong transcription	Fetal Intestine Small	intestine

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