Variant report

Variant	rs61506366
Chromosome Location	chr10:49717038-49717039
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:49713932..49717816-chr10:49742746..49746059,3	K562	blood:
2	chr10:49714827..49719872-chr10:49861427..49864767,4	K562	blood:
3	chr10:49715021..49718761-chr10:49720982..49725227,3	K562	blood:
4	chr10:49713826..49717579-chr10:49717710..49719906,5	K562	blood:
5	chr10:49579606..49581410-chr10:49715776..49718367,2	K562	blood:
6	chr10:49714746..49717330-chr10:49717821..49719600,2	MCF-7	breast:
7	chr10:49676784..49678693-chr10:49717036..49719541,2	K562	blood:
8	chr10:49714562..49719396-chr10:49719920..49724610,6	K562	blood:
9	chr10:49516068..49518164-chr10:49716922..49719391,2	K562	blood:
10	chr10:49716373..49718615-chr10:49727056..49729940,2	MCF-7	breast:
11	chr10:49715470..49718862-chr10:49725582..49728629,3	K562	blood:
12	chr10:49703894..49706471-chr10:49715514..49717897,2	K562	blood:
13	chr10:49571145..49574084-chr10:49715215..49717894,2	MCF-7	breast:
14	chr10:49663675..49666041-chr10:49714852..49717938,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction
ENSG00000248682	Chromatin interaction
ENSG00000128805	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7907983	0.89[AFR][1000 genomes]
rs9663505	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv550814	chr10:49705142-49735563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv516006	chr10:49707942-49723300	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49698000-49731200	Weak transcription	Aorta	Aorta
2	chr10:49702400-49718200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:49706000-49723400	Weak transcription	NH-A	brain
4	chr10:49709200-49720600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:49710000-49718600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:49710600-49718600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:49710600-49719200	Weak transcription	Pancreas	Pancrea
8	chr10:49711800-49718400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:49712600-49717800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:49712800-49718000	Weak transcription	Fetal Thymus	thymus
11	chr10:49713000-49719200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:49714000-49727200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:49714600-49717400	Enhancers	K562	blood
14	chr10:49715000-49717400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:49715200-49717200	Genic enhancers	NHLF	lung
16	chr10:49715400-49718200	Enhancers	HUVEC	blood vessel
17	chr10:49715800-49727800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr10:49716200-49717200	Genic enhancers	HSMM	muscle
19	chr10:49716200-49717400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr10:49716200-49717400	Enhancers	NHDF-Ad	bronchial
21	chr10:49716200-49717600	Enhancers	Adipose Nuclei	Adipose
22	chr10:49716200-49717800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr10:49716200-49718000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr10:49716200-49718400	Enhancers	Right Ventricle	heart
25	chr10:49716200-49718800	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:49716400-49717200	Enhancers	Osteobl	bone
27	chr10:49716400-49717400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:49716400-49717400	Enhancers	Lung	lung
29	chr10:49716400-49717400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:49716400-49717400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr10:49716400-49717800	Enhancers	Left Ventricle	heart
32	chr10:49716400-49717800	Enhancers	Right Atrium	heart
33	chr10:49716400-49717800	Enhancers	Spleen	Spleen
34	chr10:49716400-49718000	Enhancers	Brain Substantia Nigra	brain
35	chr10:49716400-49718000	Enhancers	Fetal Muscle Leg	muscle
36	chr10:49716600-49717400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:49716600-49717400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:49716600-49717400	Enhancers	Psoas Muscle	Psoas
39	chr10:49716600-49717400	Enhancers	HMEC	breast
40	chr10:49716600-49717600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:49716600-49717800	Enhancers	Brain Angular Gyrus	brain
42	chr10:49716600-49717800	Enhancers	Fetal Stomach	stomach
43	chr10:49716600-49717800	Enhancers	HSMMtube	muscle
44	chr10:49716600-49718000	Enhancers	Brain Cingulate Gyrus	brain
45	chr10:49716600-49718400	Enhancers	Brain Hippocampus Middle	brain
46	chr10:49716600-49718400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
47	chr10:49716600-49719200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr10:49716800-49717200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:49716800-49717200	Enhancers	Brain Anterior Caudate	brain
50	chr10:49716800-49717400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links