Variant report

Variant	rs61513924
Chromosome Location	chr7:80530136-80530137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80529265..80530969-chr7:80533590..80536459,2	K562	blood:
2	chr7:80521649..80524661-chr7:80528534..80530716,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11977933	1.00[AMR][1000 genomes]
rs57764212	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374868	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374880	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73374893	1.00[AMR][1000 genomes]
rs73374896	1.00[AMR][1000 genomes]
rs73374898	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1028776	chr7:80414636-80555284	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80471800-80532600	Weak transcription	Fetal Stomach	stomach
2	chr7:80500200-80534200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:80513400-80533400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:80513800-80530200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:80515000-80546400	Weak transcription	Left Ventricle	heart
6	chr7:80517800-80531200	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:80517800-80544600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:80518400-80531200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:80520600-80535400	Weak transcription	Fetal Kidney	kidney
10	chr7:80520800-80534000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:80520800-80546000	Weak transcription	Ovary	ovary
12	chr7:80525000-80546000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr7:80525600-80547600	Weak transcription	Gastric	stomach
14	chr7:80526200-80546600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:80526400-80532200	Weak transcription	Right Ventricle	heart
16	chr7:80526400-80534000	Weak transcription	Small Intestine	intestine
17	chr7:80526400-80534600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:80526400-80547800	Weak transcription	Lung	lung
19	chr7:80526800-80531200	Weak transcription	Fetal Intestine Large	intestine
20	chr7:80526800-80537400	Weak transcription	Psoas Muscle	Psoas
21	chr7:80527000-80546000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr7:80527200-80532000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:80528400-80530800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:80529600-80530200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr7:80529600-80530200	Genic enhancers	A549	lung
26	chr7:80529600-80531200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:80529600-80535200	Genic enhancers	HMEC	breast
28	chr7:80529600-80535400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr7:80529600-80536200	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:80529800-80530200	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr7:80529800-80530200	Strong transcription	Fetal Muscle Trunk	muscle
32	chr7:80529800-80530200	Enhancers	NH-A	brain
33	chr7:80529800-80530400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:80529800-80530400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:80529800-80530400	Enhancers	Placenta Amnion	Placenta Amnion
36	chr7:80529800-80530400	Enhancers	Rectal Mucosa Donor 31	rectum
37	chr7:80529800-80530400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr7:80529800-80530400	Enhancers	Hela-S3	cervix
39	chr7:80529800-80530400	Enhancers	HUVEC	blood vessel
40	chr7:80529800-80530600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr7:80529800-80530600	Enhancers	Colon Smooth Muscle	Colon
42	chr7:80529800-80531000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:80529800-80531000	Enhancers	Stomach Smooth Muscle	stomach
44	chr7:80529800-80531200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:80529800-80531600	Enhancers	Brain Cingulate Gyrus	brain
46	chr7:80529800-80532200	Enhancers	Rectal Smooth Muscle	rectum
47	chr7:80529800-80532200	Genic enhancers	HSMM	muscle
48	chr7:80529800-80532400	Genic enhancers	NHDF-Ad	bronchial
49	chr7:80529800-80532400	Genic enhancers	NHLF	lung
50	chr7:80529800-80532600	Enhancers	Brain Substantia Nigra	brain

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