Variant report

Variant	rs6151464
Chromosome Location	chr15:59976381-59976382
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59975500..59977075-chr15:60777726..60779647,2	K562	blood:
2	chr15:59975789..59979387-chr15:59979488..59982275,4	MCF-7	breast:
3	chr15:59974949..59977182-chr15:59979854..59981914,2	MCF-7	breast:
4	chr15:59947943..59950791-chr15:59975070..59977173,2	K562	blood:

Variant related genes	Relation type
ENSG00000259238	Chromatin interaction
ENSG00000140307	Chromatin interaction
ENSG00000140299	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1002181	0.83[AMR][1000 genomes]
rs10152209	0.81[AMR][1000 genomes]
rs10162629	0.81[AMR][1000 genomes]
rs1046053	0.81[AMR][1000 genomes]
rs11071468	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11071469	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1135148	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12593480	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12903647	0.86[AFR][1000 genomes]
rs12907554	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1552031	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17236804	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2307272	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2307275	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4533213	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4774340	0.81[AMR][1000 genomes]
rs4774341	0.81[AMR][1000 genomes]
rs4775195	0.81[AMR][1000 genomes]
rs6151442	0.80[AFR][1000 genomes]
rs6151446	0.80[AFR][1000 genomes]
rs6151447	0.80[AFR][1000 genomes]
rs6151448	0.80[AFR][1000 genomes]
rs6151449	0.80[AFR][1000 genomes]
rs6151450	0.80[AFR][1000 genomes]
rs6151458	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6151459	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6151460	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6151461	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6151462	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6151467	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6151470	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6151472	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6151474	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6151477	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6151486	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6151491	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6151494	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6151496	0.86[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6151501	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6151503	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6151504	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6151506	0.85[AMR][1000 genomes]
rs6151514	0.83[AMR][1000 genomes]
rs6151528	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6151529	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6151532	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6151533	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6151535	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6151536	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6151542	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6151545	0.82[AMR][1000 genomes]
rs6494133	0.81[AMR][1000 genomes]
rs67712565	0.82[ASN][1000 genomes]
rs67820349	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs722163	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs722164	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs728037	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs728038	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59949800-59980000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:59950400-59979600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:59951000-59978400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:59951400-59978800	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:59951600-59976400	Strong transcription	Duodenum Mucosa	Duodenum
6	chr15:59952000-59976600	Strong transcription	Primary B cells from peripheral blood	blood
7	chr15:59952000-59977800	Strong transcription	Hela-S3	cervix
8	chr15:59952200-59976400	Strong transcription	Placenta	Placenta
9	chr15:59952400-59977400	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr15:59952400-59978600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:59952600-59976800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:59952800-59977400	Strong transcription	Dnd41	blood
13	chr15:59957800-59977200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:59961600-59976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:59962000-59979400	Weak transcription	Fetal Heart	heart
16	chr15:59965000-59980200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr15:59966400-59976400	Strong transcription	K562	blood
18	chr15:59968000-59976400	Strong transcription	NHLF	lung
19	chr15:59968200-59979600	Weak transcription	Fetal Brain Male	brain
20	chr15:59969600-59977600	Weak transcription	Stomach Mucosa	stomach
21	chr15:59969600-59978400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:59969600-59980000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:59969800-59976800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:59970200-59978400	Weak transcription	Psoas Muscle	Psoas
25	chr15:59970600-59979800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:59970800-59979800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr15:59973000-59977600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:59973200-59979600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:59973400-59980000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr15:59973600-59976600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr15:59973600-59976600	Weak transcription	A549	lung
32	chr15:59973600-59977000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:59973600-59977000	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:59973600-59977800	Weak transcription	HSMM	muscle
35	chr15:59973600-59980000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr15:59973600-59980000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr15:59973600-59980000	Weak transcription	Esophagus	oesophagus
38	chr15:59973800-59977800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:59973800-59977800	Weak transcription	Brain Anterior Caudate	brain
40	chr15:59973800-59978200	Weak transcription	Fetal Kidney	kidney
41	chr15:59973800-59978400	Weak transcription	Brain Germinal Matrix	brain
42	chr15:59973800-59979600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr15:59973800-59979600	Weak transcription	Brain Angular Gyrus	brain
44	chr15:59974000-59976600	Weak transcription	Brain Substantia Nigra	brain
45	chr15:59974000-59976800	Weak transcription	HepG2	liver
46	chr15:59974000-59977000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr15:59974000-59977200	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:59974000-59978200	Weak transcription	Rectal Smooth Muscle	rectum
49	chr15:59974000-59978400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr15:59974000-59979600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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