Variant report

Variant	rs6151498
Chromosome Location	chr15:59973329-59973330
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:59973243-59973607	A549	lung:	n/a	n/a
2	POLR2A	chr15:59973215-59973597	HepG2	liver:	n/a	n/a
3	POLR2A	chr15:59973188-59973648	GM12878	blood:	n/a	n/a
4	POLR2A	chr15:59973173-59973573	K562	blood:	n/a	n/a
5	JUND	chr15:59973231-59973463	HepG2	liver:	n/a	chr15:59973373-59973383 chr15:59973374-59973382 chr15:59973372-59973383
6	CEBPB	chr15:59973106-59973461	HepG2	liver:	n/a	chr15:59973264-59973277 chr15:59973265-59973276 chr15:59973264-59973277 chr15:59973263-59973280
7	CEBPB	chr15:59973113-59973406	K562	blood:	n/a	chr15:59973264-59973277 chr15:59973265-59973276 chr15:59973264-59973277 chr15:59973263-59973280
8	POLR2A	chr15:59973190-59973562	K562	blood:	n/a	n/a
9	CEBPB	chr15:59973096-59973435	IMR90	lung:	n/a	chr15:59973264-59973277 chr15:59973265-59973276 chr15:59973264-59973277 chr15:59973263-59973280
10	CEBPB	chr15:59973250-59973339	H1-hESC	embryonic stem cell:	n/a	chr15:59973264-59973277 chr15:59973265-59973276 chr15:59973264-59973277 chr15:59973263-59973280
11	CEBPB	chr15:59973137-59973461	A549	lung:	n/a	chr15:59973264-59973277 chr15:59973265-59973276 chr15:59973264-59973277 chr15:59973263-59973280
12	POLR2A	chr15:59973300-59973419	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr15:59973257-59973509	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr15:59972448-59973488	K562	blood:	n/a	n/a
15	JUN	chr15:59973234-59973456	HepG2	liver:	n/a	chr15:59973373-59973383 chr15:59973374-59973382 chr15:59973262-59973275
16	POLR2A	chr15:59973188-59973557	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr15:59973211-59973571	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:59972912..59974867-chr15:60687293..60689870,2	MCF-7	breast:
2	chr15:59958616..59963871-chr15:59968752..59974672,6	K562	blood:
3	chr15:59970781..59973494-chr15:59980091..59981802,2	MCF-7	breast:

Variant related genes	Relation type
BNIP2	TF binding region
ENSG00000140299	Chromatin interaction
ENSG00000182718	Chromatin interaction
ENSG00000259238	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6151509	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv533240	chr15:59858093-59998176	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv1824522	chr15:59919844-59987181	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv523274	chr15:59971635-59973563	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59949800-59980000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:59950400-59979600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:59951000-59978400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:59951400-59973600	Strong transcription	Muscle Satellite Cultured Cells	--
5	chr15:59951400-59973600	Strong transcription	HSMM	muscle
6	chr15:59951400-59975000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:59951400-59975200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:59951400-59975400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:59951400-59976000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr15:59951400-59978800	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:59951600-59976400	Strong transcription	Duodenum Mucosa	Duodenum
12	chr15:59951800-59975000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:59951800-59975600	Strong transcription	Primary B cells from cord blood	blood
14	chr15:59952000-59975600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:59952000-59976600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr15:59952000-59977800	Strong transcription	Hela-S3	cervix
17	chr15:59952200-59974800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:59952200-59974800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr15:59952200-59975400	Strong transcription	Fetal Thymus	thymus
20	chr15:59952200-59975600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:59952200-59976400	Strong transcription	Placenta	Placenta
22	chr15:59952400-59974800	Strong transcription	Fetal Intestine Large	intestine
23	chr15:59952400-59975800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:59952400-59977400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr15:59952400-59978600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:59952600-59975600	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr15:59952600-59976000	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr15:59952600-59976800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr15:59952800-59977400	Strong transcription	Dnd41	blood
30	chr15:59954200-59973600	Strong transcription	A549	lung
31	chr15:59954200-59975200	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:59955000-59974400	Strong transcription	Adipose Nuclei	Adipose
33	chr15:59955800-59974800	Strong transcription	Osteobl	bone
34	chr15:59956200-59974800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr15:59956200-59975600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:59956600-59975600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:59957000-59975600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:59957800-59974800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:59957800-59977200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr15:59959000-59974200	Strong transcription	HSMMtube	muscle
41	chr15:59959200-59974200	Strong transcription	NH-A	brain
42	chr15:59959200-59975000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:59959600-59975400	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr15:59959800-59974000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:59959800-59975600	Strong transcription	GM12878-XiMat	blood
46	chr15:59960000-59974000	Strong transcription	Fetal Muscle Trunk	muscle
47	chr15:59960000-59974400	Strong transcription	H1 Cell Line	embryonic stem cell
48	chr15:59960000-59974400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr15:59960000-59974400	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr15:59960000-59974800	Strong transcription	Primary T cells from cord blood	blood

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