Variant report

Variant	rs61517361
Chromosome Location	chr5:75568302-75568303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59390961	1.00[AMR][1000 genomes]
rs73764315	1.00[AMR][1000 genomes]
rs73764366	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv870415	chr5:75526088-75738412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv980979	chr5:75561934-75576226	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75557200-75574000	Weak transcription	Right Atrium	heart
2	chr5:75565400-75569200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:75566000-75569200	Weak transcription	Fetal Stomach	stomach
4	chr5:75566400-75569200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr5:75566600-75569000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr5:75566600-75569200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:75567000-75570400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr5:75567200-75569200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:75567400-75569200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:75567600-75568400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:75567600-75569200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr5:75567800-75568400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr5:75567800-75568600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:75567800-75569200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr5:75567800-75571600	Enhancers	Fetal Lung	lung
16	chr5:75568000-75568600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:75568000-75571000	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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