Variant report

Variant	rs61517763
Chromosome Location	chr3:141068247-141068248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72986523	1.00[AMR][1000 genomes]
rs72988323	1.00[AMR][1000 genomes]
rs72990332	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829744	chr3:141016749-141189168	Genic enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv460871	chr3:141027614-141074962	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv591893	chr3:141027614-141074962	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141056400-141079400	Weak transcription	A549	lung
2	chr3:141064600-141080400	Weak transcription	Colonic Mucosa	Colon
3	chr3:141065400-141068400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:141065800-141070800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:141065800-141085200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:141066400-141079600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:141066600-141079200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:141066800-141068400	Enhancers	Fetal Intestine Small	intestine
9	chr3:141066800-141068600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr3:141066800-141079000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr3:141067200-141068400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr3:141067400-141068600	Enhancers	K562	blood
13	chr3:141067800-141079400	Weak transcription	NHLF	lung
14	chr3:141068000-141068400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:141068000-141069600	Weak transcription	Fetal Intestine Large	intestine
16	chr3:141068000-141071000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:141068000-141071800	Weak transcription	NHEK	skin
18	chr3:141068200-141071400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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