Variant report

Variant	rs615290
Chromosome Location	chr11:103946161-103946162
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10736631	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10791663	0.82[JPT][hapmap]
rs10895570	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226128	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11226132	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226134	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226139	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11226146	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226150	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12792763	1.00[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1812691	0.82[JPT][hapmap]
rs34103966	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34739592	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35982603	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361254	0.81[JPT][hapmap]
rs361256	0.82[JPT][hapmap]
rs361260	0.82[JPT][hapmap]
rs361277	0.86[JPT][hapmap]
rs361279	0.82[JPT][hapmap]
rs361280	1.00[YRI][hapmap]
rs361302	0.82[JPT][hapmap]
rs361306	0.82[JPT][hapmap]
rs361308	0.82[JPT][hapmap]
rs361310	1.00[YRI][hapmap]
rs361311	0.82[JPT][hapmap]
rs361315	0.82[JPT][hapmap]
rs361316	1.00[YRI][hapmap]
rs361322	1.00[YRI][hapmap]
rs361323	0.82[JPT][hapmap]
rs510788	0.82[JPT][hapmap]
rs513513	0.82[JPT][hapmap]
rs537824	0.81[JPT][hapmap]
rs549077	0.82[JPT][hapmap]
rs585025	0.82[JPT][hapmap]
rs587116	0.82[JPT][hapmap]
rs601049	0.82[JPT][hapmap]
rs602050	0.82[JPT][hapmap]
rs61892152	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs681959	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs682047	0.82[JPT][hapmap]
rs7951695	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv526709	chr11:103936469-103946161	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:103943800-103947000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr11:103944200-103946600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:103944200-103946800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:103944200-103947600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:103944400-103946400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr11:103944400-103948200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:103944400-103951400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:103944800-103948600	Weak transcription	Pancreas	Pancrea
9	chr11:103945000-103946600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:103945000-103961600	Weak transcription	Left Ventricle	heart
11	chr11:103945000-103964400	Weak transcription	Aorta	Aorta
12	chr11:103945000-103965400	Weak transcription	Ovary	ovary
13	chr11:103945400-103946400	Weak transcription	NHEK	skin
14	chr11:103945400-103946800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:103945400-103946800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:103945600-103946800	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr11:103945800-103946200	Weak transcription	HMEC	breast
18	chr11:103945800-103946800	Enhancers	Primary B cells from cord blood	blood
19	chr11:103946000-103946600	Enhancers	Primary B cells from peripheral blood	blood

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