Variant report

Variant	rs61536869
Chromosome Location	chr5:7873918-7873919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10380	0.84[EUR][1000 genomes]
rs1046014	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10520874	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs162026	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs162028	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16879305	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16879356	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2277958	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2303079	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2303081	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs326118	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs326210	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3776454	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41282639	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56153354	0.81[AFR][1000 genomes]
rs56219526	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57937475	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72716534	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72716536	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916892	chr5:7634377-8158890	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv949492	chr5:7682909-7953909	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv533983	chr5:7701457-8275379	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv597005	chr5:7860404-8093077	Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv427707	chr5:7866234-7966019	Strong transcription Active TSS Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61536869	MTRR	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:7870000-7875400	Weak transcription	Spleen	Spleen
2	chr5:7870200-7875400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr5:7870200-7875600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:7870200-7875600	Weak transcription	HSMMtube	muscle
5	chr5:7870200-7875800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:7870200-7875800	Weak transcription	Esophagus	oesophagus
7	chr5:7870200-7875800	Weak transcription	Gastric	stomach
8	chr5:7870200-7876000	Weak transcription	Fetal Brain Male	brain
9	chr5:7870200-7879800	Weak transcription	Pancreas	Pancrea
10	chr5:7870200-7882000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:7870200-7903400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr5:7870400-7874400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr5:7870400-7875400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr5:7870400-7875600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:7870400-7875600	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:7870600-7874800	Weak transcription	Fetal Kidney	kidney
17	chr5:7870600-7876200	Weak transcription	Fetal Stomach	stomach
18	chr5:7870600-7878000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:7870600-7878400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr5:7870800-7875400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr5:7870800-7875600	Weak transcription	Fetal Brain Female	brain
22	chr5:7870800-7879800	Weak transcription	Colonic Mucosa	Colon
23	chr5:7871000-7874000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr5:7871000-7874000	Weak transcription	NHDF-Ad	bronchial
25	chr5:7871000-7874600	Weak transcription	Adipose Nuclei	Adipose
26	chr5:7871000-7875400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:7871000-7875400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:7871000-7875400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:7871000-7875400	Weak transcription	HUVEC	blood vessel
30	chr5:7871000-7875400	Weak transcription	NH-A	brain
31	chr5:7871000-7875400	Weak transcription	NHLF	lung
32	chr5:7871000-7875600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr5:7871000-7875600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr5:7871000-7875600	Weak transcription	Ovary	ovary
35	chr5:7871000-7876000	Weak transcription	Colon Smooth Muscle	Colon
36	chr5:7871000-7894000	Weak transcription	Fetal Heart	heart
37	chr5:7871200-7874000	Genic enhancers	Primary T cells from cord blood	blood
38	chr5:7871200-7874200	Weak transcription	Primary B cells from cord blood	blood
39	chr5:7871200-7875400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr5:7871200-7903400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr5:7871200-7903600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:7871200-7903800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr5:7871400-7874400	Strong transcription	Primary hematopoietic stem cells	blood
44	chr5:7871400-7877800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr5:7871400-7878000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr5:7871400-7902400	Strong transcription	K562	blood
47	chr5:7871400-7903800	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr5:7871600-7875600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr5:7871600-7876600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr5:7871600-7886800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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