Variant report

rSNPs within LD-proxies of this variant (count:4)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830390	chr5:89054602-89236583	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89173600-89174000	Enhancers	HSMMtube	muscle
2	chr5:89173600-89174200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr5:89173600-89174200	Enhancers	Colon Smooth Muscle	Colon
4	chr5:89173600-89174400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:89173600-89174400	Enhancers	Osteobl	bone
6	chr5:89173600-89174600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:89173600-89174600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:89173600-89174600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:89173600-89174600	Enhancers	HSMM	muscle
10	chr5:89173600-89174600	Enhancers	NH-A	brain
11	chr5:89173600-89174800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr5:89173600-89174800	Enhancers	HMEC	breast
13	chr5:89173800-89174000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:89173800-89174200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr5:89173800-89174200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:89173800-89174200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:89173800-89174200	Enhancers	Lung	lung
18	chr5:89173800-89174200	Enhancers	NHEK	skin
19	chr5:89173800-89174400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:89173800-89174400	Enhancers	NHDF-Ad	bronchial

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