The 2.0 version of rSNPBase

Variant report

Variant rs61539894
Chromosome Location chr2:111893234-111893235
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:111881200-111893600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr2:111881200-111894800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr2:111881200-111904200 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr2:111881200-111909600 Weak transcription NHLF lung
5 chr2:111881200-111912800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr2:111881600-111897200 Weak transcription Stomach Mucosa stomach
7 chr2:111881600-111897400 Weak transcription Stomach Smooth Muscle stomach
8 chr2:111881600-111901000 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr2:111881600-111904200 Strong transcription HUES64 Cell Line embryonic stem cell
10 chr2:111881800-111893600 Strong transcription iPS-20b Cell Line embryonic stem cell
11 chr2:111881800-111894400 Weak transcription Brain Hippocampus Middle brain
12 chr2:111881800-111900800 Weak transcription Fetal Brain Male brain
13 chr2:111881800-111908600 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr2:111881800-111909600 Weak transcription Placenta Amnion Placenta Amnion
15 chr2:111881800-111919800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr2:111883000-111893400 Weak transcription Brain Anterior Caudate brain
17 chr2:111883200-111894800 Weak transcription NHEK skin
18 chr2:111883400-111893400 Weak transcription Spleen Spleen
19 chr2:111883400-111907800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr2:111883400-111909400 Weak transcription Aorta Aorta
21 chr2:111883400-111912600 Weak transcription Brain Inferior Temporal Lobe brain
22 chr2:111883600-111896200 Weak transcription Gastric stomach
23 chr2:111883600-111909400 Weak transcription Brain Cingulate Gyrus brain
24 chr2:111883600-111909600 Weak transcription Small Intestine intestine
25 chr2:111883800-111893400 Weak transcription Fetal Muscle Trunk muscle
26 chr2:111883800-111893600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
27 chr2:111883800-111897000 Weak transcription HMEC breast
28 chr2:111883800-111897600 Weak transcription H9 Cell Line embryonic stem cell
29 chr2:111883800-111898400 Weak transcription Brain Angular Gyrus brain
30 chr2:111883800-111904000 Weak transcription ES-I3 Cell Line embryonic stem cell
31 chr2:111884000-111894800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr2:111884000-111901600 Weak transcription Hela-S3 cervix
33 chr2:111884600-111909400 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr2:111884800-111925400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr2:111885800-111895200 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr2:111886000-111896000 Weak transcription HSMMtube muscle
37 chr2:111886200-111900800 Weak transcription Primary neutrophils fromperipheralblood blood
38 chr2:111886400-111896600 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr2:111886800-111896800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
40 chr2:111887000-111902600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr2:111887400-111893800 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr2:111887400-111896200 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr2:111887400-111912000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
44 chr2:111887600-111899400 Weak transcription Colonic Mucosa Colon
45 chr2:111887800-111898400 Weak transcription Fetal Kidney kidney
46 chr2:111888200-111893400 Weak transcription Primary T cells fromperipheralblood blood
47 chr2:111888200-111897200 Weak transcription A549 lung
48 chr2:111889800-111896200 Weak transcription Fetal Muscle Leg muscle
49 chr2:111889800-111900800 Weak transcription Duodenum Mucosa Duodenum
50 chr2:111890600-111914400 Weak transcription Primary T helper naive cells from peripheral blood blood

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Last update: Aug 31, 2015