Variant report

Variant	rs61540527
Chromosome Location	chr21:37859364-37859365
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56900455	1.00[AFR][1000 genomes]
rs57400206	1.00[AMR][1000 genomes]
rs58621477	1.00[AMR][1000 genomes]
rs59408933	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv33286	chr21:37827016-37861556	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv587470	chr21:37834641-37872447	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37851400-37860000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr21:37852000-37871000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr21:37852200-37860000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr21:37852400-37859800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr21:37852400-37864800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr21:37852600-37860000	Weak transcription	Stomach Mucosa	stomach
7	chr21:37853200-37863600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr21:37854200-37859800	Weak transcription	HUVEC	blood vessel
9	chr21:37856400-37860000	Weak transcription	Pancreas	Pancrea
10	chr21:37856600-37860000	Weak transcription	HepG2	liver
11	chr21:37858400-37860600	Enhancers	Liver	Liver
12	chr21:37858600-37864800	Weak transcription	Gastric	stomach
13	chr21:37858600-37881600	Weak transcription	Right Atrium	heart
14	chr21:37858800-37863400	Weak transcription	Fetal Muscle Leg	muscle
15	chr21:37859200-37861800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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