Variant report

Variant	rs61540534
Chromosome Location	chr7:136556162-136556163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC015987.1-7	chr7:136554552-136556710	NONHSAT123563

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28385274	0.87[AFR][1000 genomes]
rs67684214	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136553000-136556200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
2	chr7:136553000-136556200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr7:136553000-136556200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:136553000-136556400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
6	chr7:136553000-136556400	Bivalent/Poised TSS	Fetal Kidney	kidney
7	chr7:136553000-136556400	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr7:136553000-136556600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr7:136553000-136556600	Active TSS	Fetal Heart	heart
10	chr7:136553000-136556600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
11	chr7:136553000-136556600	Active TSS	Left Ventricle	heart
12	chr7:136553000-136557000	Active TSS	Rectal Smooth Muscle	rectum
13	chr7:136553000-136558000	Active TSS	Right Atrium	heart
14	chr7:136553200-136556200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr7:136553200-136556200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:136553200-136556400	Bivalent Enhancer	Liver	Liver
17	chr7:136553200-136556600	Active TSS	Colon Smooth Muscle	Colon
18	chr7:136553400-136556400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr7:136554200-136558800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:136554600-136556200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
21	chr7:136554800-136556200	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
22	chr7:136554800-136556400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:136555000-136556200	Flanking Bivalent TSS/Enh	Ovary	ovary
24	chr7:136555200-136556200	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr7:136555200-136556400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
26	chr7:136555200-136556400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:136555200-136556600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
28	chr7:136555400-136556200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:136555400-136556200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:136555400-136556200	Active TSS	Stomach Smooth Muscle	stomach
31	chr7:136555400-136556400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr7:136555400-136556400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:136555400-136556400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:136555400-136556400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
35	chr7:136555400-136556600	Bivalent Enhancer	Fetal Brain Male	brain
36	chr7:136555400-136556600	Bivalent/Poised TSS	Fetal Brain Female	brain
37	chr7:136555400-136557200	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr7:136555600-136556200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:136555600-136556200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:136555600-136556200	Bivalent/Poised TSS	Osteobl	bone
41	chr7:136555600-136556400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
42	chr7:136555600-136556400	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
43	chr7:136555600-136556600	Active TSS	Right Ventricle	heart
44	chr7:136555800-136556200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
45	chr7:136555800-136556200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
46	chr7:136555800-136556400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
47	chr7:136555800-136556400	Bivalent/Poised TSS	Fetal Stomach	stomach
48	chr7:136555800-136556400	Bivalent/Poised TSS	NH-A	brain
49	chr7:136556000-136556200	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
50	chr7:136556000-136556200	Bivalent/Poised TSS	Adipose Nuclei	Adipose

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