Variant report

Variant	rs61555713
Chromosome Location	chr6:24973543-24973544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs441572	0.81[EUR][1000 genomes]
rs453666	0.81[EUR][1000 genomes]
rs58362069	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs654285	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv883482	chr6:24926730-25035920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1030634	chr6:24938277-25040161	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24950400-24988600	Weak transcription	Dnd41	blood
2	chr6:24954400-24980800	Weak transcription	Thymus	Thymus
3	chr6:24966600-24976000	Enhancers	Primary T cells fromperipheralblood	blood
4	chr6:24968400-24974200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:24969200-24980800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:24969400-24980600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:24969600-24974200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:24969800-24974200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:24970200-24974200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:24970800-24973600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:24971000-24974200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:24971400-24974000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:24971600-24974200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:24971600-24974400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:24971800-24974200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:24971800-24974800	Weak transcription	Primary T cells from cord blood	blood
17	chr6:24972800-24974200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:24972800-24974800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:24973200-24973600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:24973200-24974200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:24973200-24974200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr6:24973200-24975200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr6:24973400-24979200	Weak transcription	Primary hematopoietic stem cells	blood

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