Variant report

Variant	rs61559359
Chromosome Location	chr7:150574229-150574230
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150145854..150146458-chr7:150573963..150574703,2	MCF-7	breast:
2	chr7:150145511..150146032-chr7:150573896..150574858,2	K562	blood:
3	chr7:150574063..150575596-chr7:150684914..150687331,2	K562	blood:
4	chr7:150475526..150476482-chr7:150573625..150574754,8	MCF-7	breast:
5	chr7:150570270..150572638-chr7:150573385..150575681,2	K562	blood:
6	chr7:150573562..150577370-chr7:150577412..150580576,4	K562	blood:
7	chr7:150484477..150485748-chr7:150573549..150574883,10	MCF-7	breast:
8	chr7:150475264..150476504-chr7:150573512..150575222,24	MCF-7	breast:
9	chr7:150475274..150476379-chr7:150573846..150574862,5	K562	blood:
10	chr7:150485004..150485681-chr7:150573803..150574496,3	MCF-7	breast:
11	chr7:150572299..150575283-chr7:150617480..150621735,3	K562	blood:
12	chr7:150572726..150575481-chr7:150755589..150757663,2	K562	blood:
13	chr7:150573002..150574576-chr7:150869374..150870431,9	K562	blood:
14	chr7:150573882..150574791-chr7:150685692..150686215,2	K562	blood:
15	chr7:150477211..150477855-chr7:150573375..150574392,3	K562	blood:
16	chr7:150573795..150574494-chr7:150595524..150596109,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000164885	Chromatin interaction
ENSG00000164889	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10268167	0.83[AMR][1000 genomes]
rs28558539	0.83[AMR][1000 genomes]
rs56044928	1.00[ASN][1000 genomes]
rs73468632	0.83[AMR][1000 genomes]
rs73468640	0.83[AMR][1000 genomes]
rs73468642	0.83[AMR][1000 genomes]
rs73468643	0.83[AMR][1000 genomes]
rs73727458	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	esv2758140	chr7:150538821-150663697	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv2759574	chr7:150538821-150663697	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv1029395	chr7:150547113-150574552	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3478426	chr7:150565520-150574349	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3478427	chr7:150565520-150574349	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv8230	chr7:150565686-150574267	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv608998	chr7:150565958-150578948	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv967441	chr7:150566747-150612420	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150569000-150576600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:150572000-150574400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr7:150572400-150574400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:150572400-150574600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr7:150572600-150574400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr7:150572600-150574800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:150572800-150574400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr7:150572800-150574400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:150573000-150574400	Enhancers	Primary T cells fromperipheralblood	blood
10	chr7:150573000-150574400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:150573000-150574600	Enhancers	Primary B cells from peripheral blood	blood
12	chr7:150573000-150575800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr7:150573200-150574600	Enhancers	Liver	Liver
14	chr7:150573200-150574600	Enhancers	Brain Cingulate Gyrus	brain
15	chr7:150573600-150574800	Enhancers	Brain Anterior Caudate	brain
16	chr7:150573800-150574400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr7:150573800-150574400	Enhancers	Brain Angular Gyrus	brain
18	chr7:150573800-150574400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr7:150573800-150574400	Active TSS	Fetal Kidney	kidney
20	chr7:150573800-150574400	Enhancers	Fetal Stomach	stomach
21	chr7:150573800-150574400	Enhancers	Fetal Thymus	thymus
22	chr7:150573800-150574400	Active TSS	Ovary	ovary
23	chr7:150573800-150574400	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr7:150573800-150574400	Enhancers	Stomach Smooth Muscle	stomach
25	chr7:150573800-150574600	Enhancers	Fetal Intestine Large	intestine
26	chr7:150573800-150574800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr7:150573800-150574800	Enhancers	Brain Substantia Nigra	brain
28	chr7:150573800-150574800	Enhancers	Fetal Lung	lung
29	chr7:150573800-150575000	Enhancers	Fetal Muscle Leg	muscle
30	chr7:150573800-150575000	Enhancers	Placenta	Placenta
31	chr7:150574000-150574400	Active TSS	H1 Cell Line	embryonic stem cell
32	chr7:150574000-150574400	Active TSS	H9 Cell Line	embryonic stem cell
33	chr7:150574000-150574400	Active TSS	iPS-15b Cell Line	embryonic stem cell
34	chr7:150574000-150574400	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr7:150574000-150574400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr7:150574000-150574400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr7:150574000-150574400	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr7:150574000-150574400	Enhancers	Left Ventricle	heart
39	chr7:150574000-150574600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
40	chr7:150574000-150574600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr7:150574000-150574600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:150574000-150575000	Enhancers	Fetal Muscle Trunk	muscle
43	chr7:150574000-150575600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr7:150574200-150574400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr7:150574200-150574400	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr7:150574200-150574400	Enhancers	Primary hematopoietic stem cells	blood
47	chr7:150574200-150574400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr7:150574200-150574400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:150574200-150574400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:150574200-150574400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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