Variant report

Variant	rs61559512
Chromosome Location	chr4:153128411-153128412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:153122427..153124713-chr4:153128038..153130217,2	K562	blood:
2	chr4:153121898..153124408-chr4:153127974..153130691,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12501920	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12513336	0.82[ASN][1000 genomes]
rs17028727	0.82[ASN][1000 genomes]
rs17028730	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3749541	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55761333	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61327034	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6847949	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:153126000-153128800	Enhancers	Fetal Heart	heart
2	chr4:153126800-153128800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:153126800-153129000	Enhancers	HUVEC	blood vessel
4	chr4:153126800-153129200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:153127000-153128800	Enhancers	Fetal Lung	lung
6	chr4:153127400-153128800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:153127600-153131400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:153127800-153128600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr4:153127800-153128600	Enhancers	Adipose Nuclei	Adipose
10	chr4:153127800-153128600	Enhancers	Dnd41	blood
11	chr4:153127800-153128800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr4:153128000-153128800	Enhancers	Fetal Kidney	kidney
13	chr4:153128000-153129600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:153128000-153129600	Weak transcription	Left Ventricle	heart
15	chr4:153128200-153129000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr4:153128200-153133200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:153128400-153128600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:153128400-153128800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr4:153128400-153128800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr4:153128400-153129000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:153128400-153129000	Enhancers	HUES64 Cell Line	embryonic stem cell

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