Variant report

Variant	rs61563402
Chromosome Location	chr1:213682915-213682916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73084712	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7517561	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7529590	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832525	chr1:213580476-213782815	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213681600-213683400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:213682000-213683200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:213682200-213683600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:213682400-213684200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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