Variant report

Variant	rs61570475
Chromosome Location	chr3:159037218-159037219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1375410	1.00[AMR][1000 genomes]
rs16830129	0.94[AFR][1000 genomes]
rs16830134	0.94[AFR][1000 genomes]
rs16830147	1.00[AMR][1000 genomes]
rs16830150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1823312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2088853	1.00[AMR][1000 genomes]
rs28418341	0.96[AFR][1000 genomes]
rs28437571	0.96[AFR][1000 genomes]
rs60824538	0.96[AFR][1000 genomes]
rs73012409	1.00[AMR][1000 genomes]
rs73012413	1.00[AMR][1000 genomes]
rs73027657	1.00[AMR][1000 genomes]
rs73027658	1.00[AMR][1000 genomes]
rs73027660	1.00[AMR][1000 genomes]
rs73027661	1.00[AMR][1000 genomes]
rs73027664	1.00[AMR][1000 genomes]
rs73027666	1.00[AMR][1000 genomes]
rs73027669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530059	chr3:158332590-159147549	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv470971	chr3:158590928-159158217	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159036000-159038400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:159037200-159037600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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