Variant report

Variant	rs61571968
Chromosome Location	chr8:5087727-5087728
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10435676	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10441647	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12546945	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4242502	0.89[ASN][1000 genomes]
rs4498579	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4636229	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4875464	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4875466	0.91[ASN][1000 genomes]
rs56781835	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs57208125	0.84[EUR][1000 genomes]
rs61364604	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62491242	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6558982	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv609876	chr8:4494811-5092970	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889978	chr8:4853197-5460166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1028846	chr8:4907673-5128665	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv889980	chr8:4940320-5112194	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv831217	chr8:5007449-5210093	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1016696	chr8:5040671-5089101	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	nsv1019369	chr8:5057818-5102396	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv1028841	chr8:5065445-5094981	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv539407	chr8:5065445-5094981	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv1024473	chr8:5070142-5089101	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv1033727	chr8:5071270-5089101	Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
13	nsv470176	chr8:5071270-5119564	Enhancers ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv465403	chr8:5076309-5116090	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
15	nsv609901	chr8:5076309-5116090	Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
16	nsv438025	chr8:5077899-5088786	Enhancers	n/a	n/a	inside rSNPs	diseases
17	nsv1021361	chr8:5081032-5091100	Enhancers	n/a	n/a	inside rSNPs	diseases
18	nsv1015757	chr8:5081032-5091271	Enhancers	n/a	n/a	inside rSNPs	diseases
19	nsv981858	chr8:5086932-5090272	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:5087000-5089000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr8:5087600-5087800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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