Variant report

Variant	rs61575505
Chromosome Location	chr5:147554472-147554473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:147526975..147528774-chr5:147550903..147554676,3	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59497986	0.81[AFR][1000 genomes]
rs6883118	0.90[AFR][1000 genomes]
rs6883447	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883015	chr5:147404281-147751035	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv830515	chr5:147460852-147602247	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3468575	chr5:147551059-147556157	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3380934	chr5:147551909-147555607	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2602125	chr5:147551924-147556057	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3468573	chr5:147551984-147555632	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3468572	chr5:147552588-147554999	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3468576	chr5:147552588-147554999	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2505853	chr5:147552751-147555437	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv823295	chr5:147553007-147555272	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv819370	chr5:147553021-147554949	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv13850	chr5:147553094-147555199	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv820675	chr5:147553094-147555272	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3388748	chr5:147553109-147555682	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1849142	chr5:147553186-147554579	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv1844059	chr5:147553186-147554733	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1851379	chr5:147553186-147554733	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	nsv599941	chr5:147553186-147554733	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv1846741	chr5:147553186-147557190	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv1847617	chr5:147553186-147557190	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv1843289	chr5:147554337-147576457	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147552200-147559800	Weak transcription	Stomach Mucosa	stomach

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