Variant report

Variant	rs61577981
Chromosome Location	chr5:177621604-177621605
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:177621142..177624086-chr5:177625603..177628449,4	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11951603	1.00[AMR][1000 genomes]
rs57559233	1.00[AMR][1000 genomes]
rs57947175	1.00[AMR][1000 genomes]
rs59922179	1.00[AMR][1000 genomes]
rs60772567	1.00[AMR][1000 genomes]
rs73338853	1.00[AMR][1000 genomes]
rs73348139	1.00[AMR][1000 genomes]
rs73348150	1.00[AMR][1000 genomes]
rs73348160	1.00[AMR][1000 genomes]
rs73348177	1.00[AMR][1000 genomes]
rs73348182	1.00[AMR][1000 genomes]
rs73348185	1.00[AMR][1000 genomes]
rs73348192	1.00[AMR][1000 genomes]
rs73348194	1.00[AMR][1000 genomes]
rs73348199	1.00[AMR][1000 genomes]
rs73349806	1.00[AMR][1000 genomes]
rs73349889	1.00[AMR][1000 genomes]
rs73351244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv1017664	chr5:177578194-177633116	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
5	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
6	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
7	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177619800-177621800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
2	chr5:177619800-177621800	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr5:177619800-177622000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:177620000-177621800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr5:177620000-177622000	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:177620000-177622000	Enhancers	Fetal Thymus	thymus
7	chr5:177620000-177622600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:177620400-177621800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:177620400-177622200	Enhancers	Dnd41	blood
10	chr5:177620600-177623200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:177621000-177621800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr5:177621000-177621800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:177621000-177622200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:177621000-177624000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:177621200-177626600	Weak transcription	Esophagus	oesophagus
16	chr5:177621400-177621800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:177621400-177621800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
18	chr5:177621400-177622000	Bivalent Enhancer	K562	blood
19	chr5:177621400-177622200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr5:177621400-177622400	Enhancers	Liver	Liver
21	chr5:177621400-177622400	Bivalent Enhancer	HepG2	liver
22	chr5:177621400-177626600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr5:177621600-177621800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr5:177621600-177621800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr5:177621600-177622200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr5:177621600-177622200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:177621600-177623200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr5:177621600-177625800	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr5:177621600-177630800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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