Variant report

Variant	rs61589887
Chromosome Location	chr11:33724198-33724199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:33721866-33724317	U87	brain:	n/a	n/a
2	POLR2A	chr11:33722124-33725044	MCF10A-Er-Src	breast:	n/a	n/a
3	POLR2A	chr11:33722071-33724569	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr11:33722026-33728243	PANC-1	pancreas:	n/a	n/a
5	POLR2A	chr11:33721095-33724992	IMR90	lung:	n/a	n/a
6	POLR2A	chr11:33724088-33724543	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr11:33722166-33724517	K562	blood:	n/a	n/a
8	POLR2A	chr11:33720387-33727134	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr11:33723968-33724253	U87	brain:	n/a	n/a
10	POLR2A	chr11:33720456-33724621	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr11:33722064-33724499	HUVEC	blood vessel:	n/a	n/a
12	POLR2A	chr11:33721912-33724377	U87	brain:	n/a	n/a
13	MAZ	chr11:33720748-33724556	IMR90	lung:	n/a	chr11:33722471-33722481
14	POLR2A	chr11:33722127-33724520	A549	lung:	n/a	n/a
15	POLR2A	chr11:33720521-33727789	HUVEC	blood vessel:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33714211..33716994-chr11:33723846..33727009,3	MCF-7	breast:
2	chr11:33722591..33725977-chr11:33729219..33731745,3	MCF-7	breast:
3	chr11:33719762..33724651-chr11:33756445..33759986,5	K562	blood:
4	chr11:33722652..33724426-chr11:33725685..33727649,2	MCF-7	breast:
5	chr11:33719802..33725980-chr11:33755197..33760109,10	MCF-7	breast:
6	chr11:33720026..33726393-chr11:33756116..33759860,12	MCF-7	breast:
7	chr11:33722219..33726232-chr11:33726761..33732163,6	K562	blood:

No data

Variant related genes	Relation type
C11orf91	TF binding region
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs60513302	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33718400-33725800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:33722400-33728800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:33722800-33725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:33722800-33728600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:33722800-33730600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:33723000-33724200	Enhancers	Left Ventricle	heart
7	chr11:33723000-33724400	Enhancers	Fetal Stomach	stomach
8	chr11:33723000-33725800	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:33723000-33726000	Enhancers	Fetal Intestine Small	intestine
10	chr11:33723000-33726000	Enhancers	Small Intestine	intestine
11	chr11:33723000-33726400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:33723000-33726400	Enhancers	Fetal Intestine Large	intestine
13	chr11:33723000-33730600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:33723000-33746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:33723200-33724200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:33723200-33724200	Enhancers	Adipose Nuclei	Adipose
17	chr11:33723200-33724200	Enhancers	Psoas Muscle	Psoas
18	chr11:33723200-33724400	Enhancers	Primary hematopoietic stem cells	blood
19	chr11:33723200-33724400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr11:33723200-33724400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:33723200-33724600	Enhancers	Fetal Lung	lung
22	chr11:33723200-33724800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr11:33723200-33725000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:33723200-33725000	Weak transcription	Gastric	stomach
25	chr11:33723200-33725400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr11:33723200-33726000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:33723200-33726000	Enhancers	HSMM	muscle
28	chr11:33723200-33726400	Enhancers	Colonic Mucosa	Colon
29	chr11:33723200-33726600	Weak transcription	Aorta	Aorta
30	chr11:33723200-33726800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:33723200-33726800	Weak transcription	Ovary	ovary
32	chr11:33723200-33728200	Weak transcription	GM12878-XiMat	blood
33	chr11:33723200-33728400	Enhancers	Brain Angular Gyrus	brain
34	chr11:33723200-33728800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr11:33723200-33729600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr11:33723200-33730200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr11:33723200-33730200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr11:33723200-33730200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:33723200-33730400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:33723200-33730600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr11:33723200-33730600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr11:33723200-33730600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:33723200-33731000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr11:33723200-33731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr11:33723200-33737400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:33723200-33744400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr11:33723200-33744400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr11:33723400-33724200	Enhancers	Brain Germinal Matrix	brain
49	chr11:33723400-33724800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:33723400-33725400	Enhancers	NHLF	lung

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