Variant report
| Variant | rs61598699 |
|---|---|
| Chromosome Location | chr4:57762981-57762982 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1002285 | 0.86[ASN][1000 genomes] |
| rs12498988 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12498992 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17087265 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1713985 | 0.86[ASN][1000 genomes] |
| rs3806746 | 0.81[ASN][1000 genomes] |
| rs6818002 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6848165 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs73165993 | 0.90[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7660153 | 0.87[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7662910 | 0.87[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7663050 | 0.87[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7663287 | 0.87[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7665897 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7666032 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7667267 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7668158 | 0.83[ASN][1000 genomes] |
| rs7683720 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7696789 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs781661 | 0.81[ASN][1000 genomes] |
| rs899633 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs899634 | 0.87[AMR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868815 | chr4:57114268-58084688 | Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 88 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012287 | chr4:57652778-57853485 | Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012125 | chr4:57668229-57865803 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:57761600-57773000 | Weak transcription | Right Atrium | heart |
