Variant report

Variant	rs61598773
Chromosome Location	chr3:136002681-136002682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135913368..135917347-chr3:136002399..136005146,3	MCF-7	breast:
2	chr3:135968816..135970584-chr3:136001826..136004051,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114054	Chromatin interaction
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs72985473	1.00[AMR][1000 genomes]
rs72985474	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv948461	chr3:135969755-136349636	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135970600-136039400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr3:135976200-136012400	Weak transcription	NHLF	lung
3	chr3:135976200-136016400	Weak transcription	Colonic Mucosa	Colon
4	chr3:135976200-136021600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr3:135981200-136052000	Weak transcription	NH-A	brain
6	chr3:135981600-136020400	Weak transcription	HUVEC	blood vessel
7	chr3:135982600-136004000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr3:135996800-136003600	Weak transcription	HMEC	breast
9	chr3:135996800-136016000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:135997000-136004000	Weak transcription	Right Ventricle	heart
11	chr3:135997000-136010600	Weak transcription	Gastric	stomach
12	chr3:135997000-136012000	Weak transcription	Spleen	Spleen
13	chr3:135997400-136015200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:135998000-136040200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:135999600-136002800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:135999600-136004000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr3:135999600-136005400	Strong transcription	HepG2	liver
18	chr3:135999800-136002800	Weak transcription	Fetal Thymus	thymus
19	chr3:135999800-136002800	Weak transcription	Lung	lung
20	chr3:135999800-136002800	Weak transcription	HSMM	muscle
21	chr3:135999800-136005200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:135999800-136013000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:135999800-136013000	Weak transcription	Small Intestine	intestine
24	chr3:135999800-136016200	Weak transcription	Esophagus	oesophagus
25	chr3:135999800-136016800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:135999800-136019000	Weak transcription	NHEK	skin
27	chr3:135999800-136038200	Weak transcription	Fetal Brain Male	brain
28	chr3:135999800-136061200	Weak transcription	Hela-S3	cervix
29	chr3:136000000-136002800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr3:136000000-136003400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr3:136000000-136004000	Weak transcription	Fetal Kidney	kidney
32	chr3:136000000-136004000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr3:136000000-136004000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr3:136000000-136004000	Weak transcription	Osteobl	bone
35	chr3:136000000-136016600	Weak transcription	Thymus	Thymus
36	chr3:136000000-136024600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr3:136000200-136004000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr3:136000200-136008200	Strong transcription	Dnd41	blood
39	chr3:136000200-136012200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:136000200-136038200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr3:136000400-136004000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:136000400-136004000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:136000400-136004000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:136000400-136004000	Weak transcription	A549	lung
45	chr3:136000600-136002800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr3:136000800-136002800	Weak transcription	Fetal Brain Female	brain
47	chr3:136001000-136002800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:136001000-136003400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:136001000-136003600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:136001200-136003800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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