Variant report

Variant	rs61599252
Chromosome Location	chr1:76535332-76535333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58547990	0.83[AFR][1000 genomes]
rs59919627	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60075767	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv870968	chr1:76490234-76552475	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521786	chr1:76525783-76535434	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76531400-76538600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:76531400-76539800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:76532600-76540000	Weak transcription	Aorta	Aorta
4	chr1:76533200-76535400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:76533800-76535400	Enhancers	Fetal Lung	lung
6	chr1:76533800-76535600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr1:76534000-76535400	Enhancers	Colon Smooth Muscle	Colon
8	chr1:76534000-76535600	Enhancers	Stomach Smooth Muscle	stomach
9	chr1:76534200-76535400	Enhancers	Stomach Mucosa	stomach
10	chr1:76534200-76535600	Enhancers	Fetal Stomach	stomach
11	chr1:76534400-76535400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr1:76534600-76535600	Enhancers	HUVEC	blood vessel
13	chr1:76534600-76539200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:76534600-76539400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:76534600-76539800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:76534600-76540000	Weak transcription	NHDF-Ad	bronchial
17	chr1:76534800-76538600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:76535000-76535400	Enhancers	Brain Substantia Nigra	brain
19	chr1:76535000-76538600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:76535000-76539800	Weak transcription	A549	lung
21	chr1:76535000-76540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr1:76535200-76535400	Enhancers	Right Atrium	heart
23	chr1:76535200-76536200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:76535200-76537000	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:76535200-76539200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:76535200-76539200	Weak transcription	NH-A	brain
27	chr1:76535200-76539400	Weak transcription	Adipose Nuclei	Adipose
28	chr1:76535200-76539400	Weak transcription	Brain Hippocampus Middle	brain
29	chr1:76535200-76539600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:76535200-76539800	Weak transcription	Fetal Kidney	kidney
31	chr1:76535200-76539800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr1:76535200-76540000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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