Variant report

Variant	rs61603879
Chromosome Location	chr2:31359555-31359556
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6718505	1.00[AFR][1000 genomes]
rs72856367	0.98[AFR][1000 genomes]
rs72856373	1.00[AFR][1000 genomes]
rs72856375	1.00[AFR][1000 genomes]
rs72856377	0.88[AFR][1000 genomes]
rs72856379	1.00[AFR][1000 genomes]
rs72856381	1.00[AFR][1000 genomes]
rs72856387	0.84[AFR][1000 genomes]
rs72857603	0.94[AFR][1000 genomes]
rs72857606	0.94[AFR][1000 genomes]
rs745523	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31350000-31359600	Weak transcription	Pancreas	Pancrea
2	chr2:31351600-31359600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:31353400-31359600	Weak transcription	Spleen	Spleen
4	chr2:31358600-31359600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:31358800-31359600	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr2:31358800-31359800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:31359000-31359600	Enhancers	Brain Germinal Matrix	brain
8	chr2:31359200-31359600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:31359200-31359600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:31359200-31359800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:31359200-31359800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:31359200-31359800	Flanking Active TSS	HMEC	breast
13	chr2:31359200-31360000	Flanking Active TSS	NHEK	skin
14	chr2:31359200-31360400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
15	chr2:31359400-31359600	Enhancers	Primary B cells from peripheral blood	blood
16	chr2:31359400-31359600	Bivalent Enhancer	Primary hematopoietic stem cells	blood
17	chr2:31359400-31359600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
18	chr2:31359400-31359600	Active TSS	Esophagus	oesophagus
19	chr2:31359400-31359800	Active TSS	Fetal Brain Female	brain
20	chr2:31359400-31360600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr2:31359400-31361600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
22	chr2:31359400-31361800	Active TSS	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links