Variant report

Variant	rs61607954
Chromosome Location	chr7:128787692-128787693
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:149222432..149225135-chr7:128784982..128787982,10	MCF-7	breast:
2	chr7:128779999..128781639-chr7:128785378..128787714,2	K562	blood:
3	chr7:128782560..128784906-chr7:128787107..128790007,2	K562	blood:
4	chr7:128782560..128785407-chr7:128786018..128790007,3	K562	blood:
5	chr7:128786541..128788232-chr7:128788627..128790504,2	K562	blood:
6	chr7:128783345..128786322-chr7:128787265..128792415,5	MCF-7	breast:
7	chr1:149221812..149225086-chr7:128784982..128788003,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206737	Chromatin interaction
ENSG00000158457	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10248733	1.00[AMR][1000 genomes]
rs58792972	1.00[AMR][1000 genomes]
rs60037093	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829719	chr7:128602992-128810971	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv831127	chr7:128716256-128874691	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv539121	chr7:128760926-128791665	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128784800-128787800	Weak transcription	Lung	lung
2	chr7:128785200-128788400	Weak transcription	Gastric	stomach
3	chr7:128785200-128789800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:128785200-128789800	Weak transcription	Right Atrium	heart
5	chr7:128785600-128788000	Enhancers	Fetal Stomach	stomach
6	chr7:128785600-128789600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:128785600-128790200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:128785600-128790800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:128785800-128788000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr7:128785800-128789800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:128785800-128807400	Weak transcription	Primary T cells from cord blood	blood
12	chr7:128785800-128808000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:128786000-128788200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:128786000-128789600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:128786000-128789600	Weak transcription	Pancreas	Pancrea
16	chr7:128786000-128792000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:128786000-128794000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:128786000-128800200	Weak transcription	Brain Anterior Caudate	brain
19	chr7:128786200-128789000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:128786400-128788200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:128786400-128790200	Weak transcription	Brain Substantia Nigra	brain
22	chr7:128786600-128788000	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr7:128786600-128791000	Enhancers	Fetal Muscle Leg	muscle
24	chr7:128786600-128801800	Weak transcription	Liver	Liver
25	chr7:128786800-128788000	Enhancers	HSMMtube	muscle
26	chr7:128786800-128788400	Enhancers	Primary B cells from cord blood	blood
27	chr7:128786800-128789800	Weak transcription	Fetal Intestine Small	intestine
28	chr7:128786800-128790000	Weak transcription	HepG2	liver
29	chr7:128787000-128788200	Flanking Active TSS	GM12878-XiMat	blood
30	chr7:128787000-128788600	Enhancers	Colonic Mucosa	Colon
31	chr7:128787200-128790600	Genic enhancers	Primary B cells from peripheral blood	blood
32	chr7:128787200-128790800	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr7:128787400-128787800	Enhancers	Stomach Smooth Muscle	stomach
34	chr7:128787400-128788000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr7:128787400-128788200	Enhancers	Brain Hippocampus Middle	brain
36	chr7:128787400-128788200	Enhancers	Duodenum Mucosa	Duodenum
37	chr7:128787400-128788400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:128787400-128788600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr7:128787400-128788800	Bivalent Enhancer	Placenta	Placenta
40	chr7:128787400-128788800	Enhancers	Spleen	Spleen
41	chr7:128787600-128788200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:128787600-128789600	Weak transcription	Left Ventricle	heart
43	chr7:128787600-128790400	Enhancers	Ovary	ovary

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