Variant report

Variant	rs61610305
Chromosome Location	chr2:87006757-87006758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56704278	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv10063	chr2:86940988-87084360	Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1002420	chr2:86948835-87172715	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv874472	chr2:86961252-87071474	Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1008817	chr2:86970406-87172715	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv14382	chr2:86972214-87174121	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv997982	chr2:86972834-87105864	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1007746	chr2:86972834-87172715	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	nsv458585	chr2:86974318-87108211	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv582373	chr2:86974318-87108211	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
11	nsv1007307	chr2:86974563-87055214	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv535809	chr2:86974563-87055214	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv1003748	chr2:86975514-87032318	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv535810	chr2:86975514-87032318	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv1004572	chr2:86975514-87082883	Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
16	nsv535811	chr2:86975514-87082883	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86981600-87007000	Weak transcription	NHDF-Ad	bronchial
2	chr2:86984600-87007600	Weak transcription	Psoas Muscle	Psoas
3	chr2:86998200-87007000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:86998400-87009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:86998600-87007000	Weak transcription	Fetal Kidney	kidney
6	chr2:86998800-87008600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:87000200-87007000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:87000400-87008400	Weak transcription	HSMM	muscle
9	chr2:87000800-87006800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr2:87001400-87014800	Weak transcription	Brain Substantia Nigra	brain
11	chr2:87001600-87008400	Weak transcription	K562	blood
12	chr2:87001800-87007200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:87002000-87010600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr2:87002000-87012600	Weak transcription	Placenta	Placenta
15	chr2:87002200-87007400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:87002200-87008400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr2:87002200-87014800	Weak transcription	Brain Hippocampus Middle	brain
18	chr2:87002600-87008800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr2:87002600-87011000	Weak transcription	Colonic Mucosa	Colon
20	chr2:87002800-87008200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:87002800-87010600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr2:87002800-87015200	Weak transcription	Brain Angular Gyrus	brain
23	chr2:87003000-87006800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr2:87003200-87007400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:87003200-87010600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr2:87003200-87011000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr2:87003800-87006800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr2:87003800-87007600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr2:87003800-87009200	Weak transcription	Fetal Intestine Small	intestine
30	chr2:87003800-87010800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr2:87003800-87015000	Weak transcription	Brain Anterior Caudate	brain
32	chr2:87003800-87016000	Weak transcription	Pancreas	Pancrea
33	chr2:87004000-87007200	Weak transcription	NHEK	skin
34	chr2:87004000-87008200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr2:87004000-87008400	Weak transcription	Liver	Liver
36	chr2:87004000-87008400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr2:87004000-87011000	Weak transcription	Esophagus	oesophagus
38	chr2:87004000-87011000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr2:87004200-87006800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr2:87004200-87006800	Weak transcription	Fetal Lung	lung
41	chr2:87004200-87007000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr2:87004200-87007800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr2:87004200-87008400	Weak transcription	Adipose Nuclei	Adipose
44	chr2:87004200-87010400	Weak transcription	GM12878-XiMat	blood
45	chr2:87004200-87010600	Weak transcription	Primary T cells from cord blood	blood
46	chr2:87004400-87007000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr2:87004400-87007000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr2:87004400-87008200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr2:87004400-87008400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:87004400-87008400	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links