Variant report

Variant	rs61610727
Chromosome Location	chr2:31534956-31534957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13394366	1.00[EUR][1000 genomes]
rs583535	1.00[EUR][1000 genomes]
rs72862613	1.00[EUR][1000 genomes]
rs72862618	1.00[EUR][1000 genomes]
rs72862627	1.00[EUR][1000 genomes]
rs7600936	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949028	chr2:31502801-31665108	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv2762446	chr2:31521093-31610311	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31526600-31542400	Weak transcription	NHEK	skin
2	chr2:31526800-31542800	Weak transcription	HMEC	breast
3	chr2:31527000-31535600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:31527400-31541000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:31528200-31554000	Weak transcription	Right Ventricle	heart
6	chr2:31533200-31546800	Weak transcription	Liver	Liver
7	chr2:31533600-31535800	Enhancers	Fetal Thymus	thymus
8	chr2:31534000-31535000	Enhancers	Dnd41	blood
9	chr2:31534000-31542800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:31534200-31535000	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr2:31534400-31539600	Weak transcription	Thymus	Thymus
12	chr2:31534800-31541800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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