Variant report

Variant	rs61610742
Chromosome Location	chr5:89749005-89749006
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89748881..89751681-chr5:89752674..89755420,2	K562	blood:
2	chr5:89745902..89749933-chr5:89767709..89771809,5	K562	blood:

Variant related genes	Relation type
ENSG00000113356	Chromatin interaction
ENSG00000176055	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10041220	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10043702	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10214167	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10473934	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10942593	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10942594	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11953207	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11956418	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12516555	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13436287	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2303801	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28728101	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28815472	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34397682	0.95[EUR][1000 genomes]
rs3763070	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3763072	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3805478	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59742368	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6864062	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6867534	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6872360	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6889253	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6889947	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6890115	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7729481	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7730433	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7732363	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
7	nsv518131	chr5:89748142-89781594	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv882364	chr5:89748142-89808531	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89734600-89769000	Weak transcription	Pancreas	Pancrea
2	chr5:89736000-89753000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:89736400-89754400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:89736400-89767600	Weak transcription	Hela-S3	cervix
5	chr5:89736400-89768400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:89737600-89751800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:89737600-89757000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:89742800-89750400	Weak transcription	Liver	Liver
9	chr5:89743800-89751000	Weak transcription	Fetal Stomach	stomach
10	chr5:89743800-89767800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:89744000-89750600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:89744200-89759000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:89744400-89751600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:89744400-89768600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr5:89745400-89765800	Weak transcription	A549	lung
16	chr5:89746200-89750600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:89746400-89765200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:89747200-89750600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:89747400-89768600	Weak transcription	NHDF-Ad	bronchial
20	chr5:89747600-89760200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:89748000-89768400	Weak transcription	Duodenum Mucosa	Duodenum
22	chr5:89748200-89757400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:89748200-89759600	Weak transcription	Primary T cells from cord blood	blood
24	chr5:89748400-89768600	Weak transcription	Adipose Nuclei	Adipose
25	chr5:89748600-89750600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr5:89748600-89750800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:89748600-89754400	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr5:89748600-89768200	Weak transcription	Osteobl	bone
29	chr5:89748800-89753000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:89749000-89754400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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