Variant report

Variant	rs61610971
Chromosome Location	chr9:7787693-7787694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7787126..7791154-chr9:7791178..7794501,4	K562	blood:
2	chr9:7785236..7788053-chr9:7798343..7800585,2	K562	blood:

Variant related genes	Relation type
ENSG00000137038	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7023130	1.00[AMR][1000 genomes]
rs73417567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73417583	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv613266	chr9:7588854-7901308	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv892213	chr9:7770942-7856992	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv892214	chr9:7774180-7822486	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7778000-7792400	Weak transcription	Psoas Muscle	Psoas
2	chr9:7778200-7790200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr9:7780400-7792600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:7780600-7792600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:7780800-7788000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:7780800-7793400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:7780800-7794400	Weak transcription	Osteobl	bone
8	chr9:7781000-7792400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:7781000-7794600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:7781200-7791600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr9:7781800-7794400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:7782200-7790600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:7782600-7794600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:7782800-7789600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:7783000-7790400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr9:7783000-7794200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:7783200-7790600	Weak transcription	Dnd41	blood
18	chr9:7783200-7792000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr9:7783400-7792600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:7783400-7794600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:7783800-7794600	Weak transcription	A549	lung
22	chr9:7783800-7794800	Weak transcription	HSMMtube	muscle
23	chr9:7784000-7790800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:7784000-7793000	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr9:7784200-7794400	Weak transcription	HUVEC	blood vessel
26	chr9:7784400-7789200	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr9:7784400-7794400	Weak transcription	Fetal Brain Female	brain
28	chr9:7784600-7792000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr9:7784800-7790800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:7785000-7790000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr9:7785000-7790200	Weak transcription	Fetal Heart	heart
32	chr9:7785000-7790400	Weak transcription	Fetal Stomach	stomach
33	chr9:7785000-7790600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:7785000-7792400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr9:7785200-7791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr9:7785200-7794400	Weak transcription	Brain Anterior Caudate	brain
37	chr9:7785400-7788800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:7785400-7792400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr9:7785400-7798400	Weak transcription	Fetal Brain Male	brain
40	chr9:7785600-7787800	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr9:7785600-7788000	Weak transcription	Brain Hippocampus Middle	brain
42	chr9:7785600-7793000	Weak transcription	NHEK	skin
43	chr9:7785600-7794200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:7785600-7798400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr9:7785600-7798400	Weak transcription	HSMM	muscle
46	chr9:7785800-7788800	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr9:7785800-7798600	Weak transcription	Colonic Mucosa	Colon
48	chr9:7786000-7788600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr9:7786000-7788600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:7786000-7788600	Weak transcription	Brain Substantia Nigra	brain

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