Variant report

Variant	rs61617955
Chromosome Location	chr7:4854200-4854201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:4854200-4854350	NHEK	skin:	n/a	n/a
2	CTCF	chr7:4854180-4854330	HepG2	liver:	n/a	n/a
3	CTCF	chr7:4854180-4854330	GM12869	blood:	n/a	n/a
4	CTCF	chr7:4854200-4854350	GM12870	blood:	n/a	n/a
5	CTCF	chr7:4854160-4854310	GM12871	blood:	n/a	n/a
6	CTCF	chr7:4854180-4854330	GM12871	blood:	n/a	n/a
7	CTCF	chr7:4854160-4854310	GM12873	blood:	n/a	n/a
8	CTCF	chr7:4854200-4854350	GM12872	blood:	n/a	n/a
9	CTCF	chr7:4854100-4854250	HL-60	blood:	n/a	n/a
10	CTCF	chr7:4854140-4854290	GM12864	blood:	n/a	n/a
11	POLR2A	chr7:4853978-4854594	H1-neurons	neurons:	n/a	n/a
12	CTCF	chr7:4854160-4854310	HRE	kidney:	n/a	n/a
13	CTCF	chr7:4854160-4854310	GM12875	blood:	n/a	n/a
14	CTCF	chr7:4854180-4854330	GM12873	blood:	n/a	n/a
15	CTCF	chr7:4854140-4854290	RPTEC	kidney:	n/a	n/a
16	CTCF	chr7:4854100-4854250	GM12866	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000206895	TF binding region

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57067808	1.00[AMR][1000 genomes]
rs58237643	1.00[AMR][1000 genomes]
rs61269946	0.83[AFR][1000 genomes]
rs73310597	1.00[AMR][1000 genomes]
rs73312604	1.00[AMR][1000 genomes]
rs73312617	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73312647	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529538	chr7:4509189-5151503	Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv530968	chr7:4572250-5418004	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1031697	chr7:4677463-5241790	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv538704	chr7:4677463-5241790	Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv887377	chr7:4730535-4862259	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv887378	chr7:4730535-4929721	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv887380	chr7:4760124-4929721	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv471293	chr7:4764861-4885221	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv887381	chr7:4769030-4880954	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv823994	chr7:4792385-4928328	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
11	nsv887382	chr7:4792762-4880954	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv8033	chr7:4802287-5086597	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
13	nsv1022678	chr7:4810626-5113387	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv538705	chr7:4810626-5113387	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
15	nsv887385	chr7:4820581-4860835	Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
16	nsv528748	chr7:4820581-5010993	Enhancers Strong transcription Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
17	nsv1029123	chr7:4821734-4919277	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
18	nsv887387	chr7:4823971-4860835	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
19	nsv887388	chr7:4823971-4880954	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
20	nsv605978	chr7:4828077-4854592	Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1021170	chr7:4831361-5058033	Bivalent Enhancer Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
22	nsv538706	chr7:4831361-5058033	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
23	nsv1025467	chr7:4850447-5021443	ZNF genes & repeats Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:4832400-4857600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:4832400-4859800	Weak transcription	Right Atrium	heart
3	chr7:4834800-4876800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:4836200-4877600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:4838200-4854200	Weak transcription	Right Ventricle	heart
6	chr7:4838400-4859800	Weak transcription	Left Ventricle	heart
7	chr7:4844000-4858000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:4846800-4876600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:4847200-4869600	Weak transcription	Brain Substantia Nigra	brain
10	chr7:4847800-4859200	Weak transcription	Fetal Heart	heart
11	chr7:4848000-4857800	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:4848000-4863200	Weak transcription	Fetal Brain Male	brain
13	chr7:4848200-4857400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:4848400-4854200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:4849000-4856800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:4849200-4855000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:4849200-4857000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:4849200-4875800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:4850200-4854200	Weak transcription	Adipose Nuclei	Adipose
20	chr7:4850600-4856200	Weak transcription	Fetal Muscle Leg	muscle
21	chr7:4850800-4873800	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:4852200-4856600	Strong transcription	Fetal Lung	lung
23	chr7:4852400-4855000	Strong transcription	Fetal Brain Female	brain
24	chr7:4852800-4856000	Strong transcription	Brain Anterior Caudate	brain
25	chr7:4853000-4854800	Enhancers	Primary hematopoietic stem cells	blood
26	chr7:4853000-4857600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr7:4853400-4855000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:4853600-4854800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:4853600-4855800	Strong transcription	Fetal Stomach	stomach
30	chr7:4853800-4854600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr7:4853800-4854600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:4853800-4854600	Strong transcription	Brain Germinal Matrix	brain
33	chr7:4853800-4856600	Strong transcription	Lung	lung
34	chr7:4853800-4859000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:4853800-4869000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:4854000-4854600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
37	chr7:4854000-4854800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:4854000-4856200	Weak transcription	Brain Angular Gyrus	brain
39	chr7:4854200-4854400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:4854200-4854600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
41	chr7:4854200-4854800	Strong transcription	Adipose Nuclei	Adipose
42	chr7:4854200-4854800	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
43	chr7:4854200-4855000	Strong transcription	Right Ventricle	heart

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