Variant report

Variant	rs61630411
Chromosome Location	chr3:45907425-45907426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2373091	1.00[AMR][1000 genomes]
rs35678722	1.00[AMR][1000 genomes]
rs58248472	1.00[AMR][1000 genomes]
rs59463879	1.00[AMR][1000 genomes]
rs59551829	1.00[AMR][1000 genomes]
rs60514862	1.00[AMR][1000 genomes]
rs60663814	1.00[AMR][1000 genomes]
rs6798465	1.00[AMR][1000 genomes]
rs6806198	1.00[AMR][1000 genomes]
rs72884905	1.00[AMR][1000 genomes]
rs72884920	1.00[AMR][1000 genomes]
rs7619090	1.00[AMR][1000 genomes]
rs7631934	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45902600-45910200	Weak transcription	Gastric	stomach
2	chr3:45905400-45911000	Weak transcription	Esophagus	oesophagus
3	chr3:45906200-45907600	Enhancers	Primary B cells from peripheral blood	blood
4	chr3:45906400-45907600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:45906400-45907600	Enhancers	Duodenum Mucosa	Duodenum
6	chr3:45906400-45907800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:45906600-45907800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:45906600-45908000	Flanking Active TSS	Dnd41	blood
9	chr3:45906800-45907800	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:45906800-45912600	Enhancers	Fetal Thymus	thymus
11	chr3:45907000-45909800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:45907000-45911200	Enhancers	Thymus	Thymus
13	chr3:45907200-45907800	Enhancers	Primary T cells from cord blood	blood
14	chr3:45907200-45910400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:45907400-45907600	Flanking Active TSS	GM12878-XiMat	blood
16	chr3:45907400-45910200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr3:45907400-45910200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr3:45907400-45910400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:45907400-45910400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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