Variant report

Variant	rs61633718
Chromosome Location	chr11:107727460-107727461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17107515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56656084	1.00[AMR][1000 genomes]
rs58868361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59598426	1.00[AMR][1000 genomes]
rs61662830	1.00[AMR][1000 genomes]
rs7102503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544904	1.00[AMR][1000 genomes]
rs73546836	1.00[AMR][1000 genomes]
rs73546873	0.81[AFR][1000 genomes]
rs73546884	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73548837	1.00[AMR][1000 genomes]
rs73553022	1.00[AMR][1000 genomes]
rs73559681	1.00[AMR][1000 genomes]
rs73559691	1.00[AMR][1000 genomes]
rs73559692	1.00[AMR][1000 genomes]
rs73561734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1039425	chr11:107468681-107895836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv427899	chr11:107471544-107805894	Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1049524	chr11:107540937-107954011	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1038581	chr11:107564274-107838386	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv898378	chr11:107580985-107847983	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv521771	chr11:107590335-107904646	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv1048938	chr11:107604473-107929950	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1045388	chr11:107686808-107733498	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv2750980	chr11:107720941-107970986	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv1043139	chr11:107725297-107869216	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:107673400-107727800	Weak transcription	Primary B cells from cord blood	blood
2	chr11:107712200-107728400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:107712400-107727800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr11:107712400-107728000	Weak transcription	NHDF-Ad	bronchial
5	chr11:107712600-107728200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:107712600-107728600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:107713000-107728400	Weak transcription	Fetal Intestine Small	intestine
8	chr11:107715000-107727800	Weak transcription	HMEC	breast
9	chr11:107716600-107727600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:107719600-107727600	Weak transcription	A549	lung
11	chr11:107719600-107728800	Weak transcription	Small Intestine	intestine
12	chr11:107720000-107727600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:107720000-107727800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:107721000-107728200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:107721200-107728400	Weak transcription	Gastric	stomach
16	chr11:107721600-107728400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:107721800-107727600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:107724000-107727800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr11:107724200-107727600	Weak transcription	NHEK	skin
20	chr11:107725600-107727600	Active TSS	GM12878-XiMat	blood
21	chr11:107726200-107727800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:107726200-107728000	Weak transcription	HUVEC	blood vessel
23	chr11:107726800-107727600	Enhancers	K562	blood
24	chr11:107727000-107727600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:107727000-107727600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr11:107727000-107727800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:107727000-107728200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr11:107727000-107728600	Enhancers	Primary T cells fromperipheralblood	blood
29	chr11:107727200-107727600	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr11:107727200-107727600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr11:107727200-107727600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:107727200-107727800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:107727200-107727800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:107727200-107727800	Enhancers	Esophagus	oesophagus
35	chr11:107727200-107728000	Active TSS	Hela-S3	cervix
36	chr11:107727200-107728200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr11:107727200-107728400	Active TSS	ES-I3 Cell Line	embryonic stem cell
38	chr11:107727200-107728400	Active TSS	H9 Cell Line	embryonic stem cell
39	chr11:107727200-107728400	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr11:107727200-107728400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:107727200-107728400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:107727200-107728400	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr11:107727200-107728600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr11:107727200-107729000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr11:107727200-107729000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:107727400-107727600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
47	chr11:107727400-107727800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr11:107727400-107728000	Active TSS	Duodenum Mucosa	Duodenum

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