Variant report

Variant	rs61636750
Chromosome Location	chr5:57234219-57234220
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:57232336..57234961-chr5:57754268..57756704,2	MCF-7	breast:
2	chr5:57233939..57234587-chr5:57755933..57756899,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11740997	0.89[AMR][1000 genomes]
rs11741208	0.87[AMR][1000 genomes]
rs11742445	0.89[AMR][1000 genomes]
rs13160441	0.85[AMR][1000 genomes]
rs1349957	0.91[AMR][1000 genomes]
rs1352609	0.89[AMR][1000 genomes]
rs1352610	0.89[AMR][1000 genomes]
rs1387641	0.85[AMR][1000 genomes]
rs1454920	0.89[AMR][1000 genomes]
rs1454924	0.85[AMR][1000 genomes]
rs1454925	0.85[AMR][1000 genomes]
rs1454926	0.85[AMR][1000 genomes]
rs1454928	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489791	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1489797	0.85[AMR][1000 genomes]
rs17749982	0.84[AMR][1000 genomes]
rs1826101	0.89[AMR][1000 genomes]
rs1826106	0.85[AMR][1000 genomes]
rs1844437	0.89[AMR][1000 genomes]
rs4699920	0.85[AMR][1000 genomes]
rs4700243	0.85[AMR][1000 genomes]
rs4700244	0.85[AMR][1000 genomes]
rs4700245	0.85[AMR][1000 genomes]
rs56976559	0.91[AMR][1000 genomes]
rs62359093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62359098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62359143	0.95[ASN][1000 genomes]
rs62359144	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62359145	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62359146	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62359147	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62359148	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes]
rs62360185	0.83[AMR][1000 genomes]
rs62360186	0.89[AMR][1000 genomes]
rs62360187	0.89[AMR][1000 genomes]
rs62360200	0.89[AMR][1000 genomes]
rs62362089	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62368373	0.89[AMR][1000 genomes]
rs62368399	0.82[AMR][1000 genomes]
rs62368400	0.87[AMR][1000 genomes]
rs62368401	0.84[AMR][1000 genomes]
rs62368402	0.87[AMR][1000 genomes]
rs62368407	0.89[AMR][1000 genomes]
rs62368408	0.89[AMR][1000 genomes]
rs62368409	0.89[AMR][1000 genomes]
rs62368412	0.89[AMR][1000 genomes]
rs62368414	0.89[AMR][1000 genomes]
rs62368415	0.87[AMR][1000 genomes]
rs6450458	0.89[AMR][1000 genomes]
rs6884729	0.89[AMR][1000 genomes]
rs6886096	0.89[AMR][1000 genomes]
rs7713227	0.89[AMR][1000 genomes]
rs7736576	0.89[AMR][1000 genomes]
rs984926	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1792273	chr5:57214817-57320343	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57233600-57235200	Weak transcription	HSMM	muscle
2	chr5:57234200-57235200	Enhancers	Pancreatic Islets	Pancreatic Islet

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