Variant report

Variant	rs61642432
Chromosome Location	chr22:31257775-31257776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12166082	1.00[ASN][1000 genomes]
rs56127349	0.84[ASN][1000 genomes]
rs58514041	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv914973	chr22:31232074-31264281	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv914974	chr22:31249333-31279536	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31249400-31259000	Weak transcription	HSMM	muscle
2	chr22:31251800-31264200	Weak transcription	Fetal Muscle Leg	muscle
3	chr22:31253400-31258000	Weak transcription	Lung	lung
4	chr22:31253800-31259000	Weak transcription	Fetal Lung	lung
5	chr22:31255200-31259000	Weak transcription	HSMMtube	muscle
6	chr22:31255600-31259600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr22:31255800-31262800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr22:31256000-31266400	Weak transcription	Hela-S3	cervix
9	chr22:31256600-31264200	Weak transcription	Fetal Brain Female	brain
10	chr22:31256800-31258000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr22:31256800-31258000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr22:31257000-31258000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr22:31257000-31258200	Weak transcription	Spleen	Spleen
14	chr22:31257000-31259000	Weak transcription	Brain Angular Gyrus	brain
15	chr22:31257000-31259000	Weak transcription	Brain Anterior Caudate	brain
16	chr22:31257000-31259600	Weak transcription	Brain Hippocampus Middle	brain
17	chr22:31257000-31259600	Weak transcription	Brain Substantia Nigra	brain
18	chr22:31257000-31264000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr22:31257200-31258000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr22:31257200-31259000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr22:31257400-31258000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr22:31257400-31259000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr22:31257400-31265400	Weak transcription	NHEK	skin
24	chr22:31257600-31259200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr22:31257600-31260000	Weak transcription	H9 Cell Line	embryonic stem cell

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