Variant report

Variant	rs61644695
Chromosome Location	chr1:210113724-210113725
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1016481	0.89[AFR][1000 genomes]
rs11801400	0.89[AMR][1000 genomes]
rs12239590	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2018942	0.89[AMR][1000 genomes]
rs56271040	0.89[AMR][1000 genomes]
rs58701658	0.90[AMR][1000 genomes]
rs6692116	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73066422	0.89[AFR][1000 genomes]
rs7530907	0.89[AMR][1000 genomes]
rs7556078	0.90[AMR][1000 genomes]
rs970788	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1825811	chr1:210082206-210135806	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1821002	chr1:210108473-210291476	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2006403	chr1:210113725-210113726	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210112400-210113800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr1:210112600-210128400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:210112800-210115400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:210113000-210114200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:210113000-210115400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:210113000-210115800	Weak transcription	Fetal Brain Female	brain
7	chr1:210113000-210118600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:210113200-210119600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:210113600-210113800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
10	chr1:210113600-210114400	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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