Variant report

Variant	rs61645849
Chromosome Location	chr8:54604213-54604214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58446058	1.00[AMR][1000 genomes]
rs59188430	1.00[EUR][1000 genomes]
rs59751066	1.00[AMR][1000 genomes]
rs61453862	1.00[AMR][1000 genomes]
rs6998009	1.00[AMR][1000 genomes]
rs73682533	1.00[EUR][1000 genomes]
rs73682538	1.00[AMR][1000 genomes]
rs73682541	1.00[AMR][1000 genomes]
rs73682559	1.00[AMR][1000 genomes]
rs7845915	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv890919	chr8:54521248-54607336	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv890920	chr8:54559770-54626539	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54599600-54604800	Weak transcription	Fetal Heart	heart
2	chr8:54600800-54604400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:54602800-54605400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:54603200-54604800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:54603600-54604800	Weak transcription	HSMM	muscle
6	chr8:54603600-54605400	Weak transcription	Pancreas	Pancrea
7	chr8:54603600-54605400	Weak transcription	HSMMtube	muscle
8	chr8:54604000-54605000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:54604000-54605200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr8:54604200-54605200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:54604200-54605200	Weak transcription	Fetal Brain Female	brain
12	chr8:54604200-54605200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr8:54604200-54605400	Enhancers	Colon Smooth Muscle	Colon
14	chr8:54604200-54605400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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